fbrundu

.CodeMirror, div.prompt.input_prompt, div.prompt.output_prompt, pre {
    font-family: "Inconsolata for Powerline";
    font-size: 100%;
}

fbrundu

<style>

html {
  font-size: 62.5% !important; }
body {
  font-size: 1.5em !important; /* currently ems cause chrome bug misinterpreting rems on body element */
  line-height: 1.6 !important;
  font-weight: 400 !important;
  font-family: "HelveticaNeue", "Helvetica Neue", Helvetica, Arial, sans-serif !important;
  color: #222 !important; }

fbrundu

import pandas as pd
import sys
import re

tcga_tsv = sys.argv[1]

tcga = pd.read_table(tcga_tsv, sep='\t', index_col=0)

oldcolumns = tcga.columns.tolist()
newcolumns = ['-'.join(re.findall(r'TCGA[^_]*', oc)[0].split('-')[:4])

fbrundu

import pandas as pd
import numpy as np
import sys
import random as rnd

csv = sys.argv[1]
out = sys.argv[2]

df = pd.read_table(csv, sep='\t', index_col=0)

fbrundu

import pandas as pd
import sys
import glob
import os

# input / output directory
input_dir = sys.argv[1]
# input file extension
input_ext = sys.argv[2]
# cardinality of index columns (rownames)

fbrundu

# line number after ==
# change \\t with the delimiter you want to use instead of tab for splitting to words
words_count=$(awk 'NR==5{print}' data.csv | tr \\t \\n | wc -l)
unique_words_count=$(awk 'NR==5{print}' data.csv | tr \\t \\n | uniq | wc -l)

if [[ "$words_count" -ne "$unique_words_counts" ]]; then
    echo "Not unique"
else
    echo "Unique"