fhdsl-robot

## basic_04.wdl
version 1.0

task do_something {
    input {
        File fastq
        String basename_of_fq
    }
    command <<<
        echo "First ten lines of ~{basename_of_fq}: " >> output.txt
        head ~{fastq} >> output.txt

## basic_04.json
{
    "my_workflow.fq": "./data/example.fq"
}

## basic_03.wdl
version 1.0

task do_something {
    input {
        File fastq
        String basename_of_fq
    }
    command <<<
        echo "First ten lines of ~{basename_of_fq}: "
        head ~{fastq}

## basic_02.wdl
version 1.0

task do_something {
    input {
        File fastq
    }
    command <<<
        exit 0
    >>>
}

## basic_01.wdl
version 1.0

task do_something {
    command <<<
        exit 0
    >>>
}

workflow my_workflow {
    call do_something
	version 1.0

	task do_something {
	input {
	File fastq
	String basename_of_fq
	}
	command <<<
	echo "First ten lines of ~{basename_of_fq}: " >> output.txt
	head ~{fastq} >> output.txt