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from pyraf import iraf

def sep_spec(spec, aperture):
    """Separate the multi spectrum in its orders"""

    nslits = int(iraf.imhead(spec, Stdout=1)[0].split(',')[1])
    for i in xrange(1, nslits+1):
        spec_in = spec+'[*,'+str(i)+','+aperture+']'
        if i<10:
            spec_out = './'+spec.split('.fits')[0]+'_000'+str(i)+'.fits'

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from subprocess import Popen, PIPE

def run_idl(inp, do_log = False):
    """Run IDL"""
    
    if do_log:
        with open('idl.log', 'w') as log:
            idl = Popen(['nice','-n0','idl'],stdin = PIPE, \
                           stdout=log,stderr=log)
            idl.communicate(inp)

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To get Git to diff between your odt/odp/ods files you will need to do the following things:

Install a conversion tool
$ sudo yum install odt2txt

Create your git config info directory if it's not already there
$ mkdir -p ~/.config/git/info

Add in attributes (you can paste this straight in or edit the file accordingly)
$ cat > ~/.config/git/info/attributes <<DELIM

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import scipy.stats as st
import numpy as np
import matplotlib.pytlot as plt

def contour_plot(array3d, **kwargs):
    """
    Do the contour plot of a X, Y, Z vector. 
    
    Parameters
    ----------

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import numpy as np

def create_list(list1, list2):
    """
    list1 : N-dimensional list
    list2 : 1-dimensional list
    """

    return np.array([np.append(np.array(i), j) for i in list1 for j in list2])

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def append(xs, yss):
    return [[x] + ys for x in xs for ys in yss]

def make_lists(*xss):
    if len(xss) == 1:
        return [[x] for x in xss[0]]
    h, t = xss[0], xss[1:]
    return append(h, make_lists(*t))

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#!/usr/bin/env python
"""
Script for running and save notebooks from command line.

How to use: `ipynb_run_save.py foo.ipynb

Some tweaks over ipydoctest.py from minrk

by @damianavila
"""

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%matplotlib inline
import matplotlib.pyplot as plt
plt.rcParams['figure.figsize'] = 16, 12  # that's default image size for this interactive session
plt.rcParams['figure.dpi'] = 100
plt.rcParams['axes.titlesize'] = 22
plt.rcParams['axes.labelsize'] = 18
plt.rcParams['lines.linewidth'] = 2
plt.rcParams['lines.markersize'] = 8
plt.rcParams['xtick.labelsize'] = 14
plt.rcParams['ytick.labelsize'] = 14

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{
 "metadata": {
  "name": ""
 },
 "nbformat": 3,
 "nbformat_minor": 0,
 "worksheets": [
  {
   "cells": [
    {

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{
 "metadata": {
  "name": ""
 },
 "nbformat": 3,
 "nbformat_minor": 0,
 "worksheets": [
  {
   "cells": [
    {