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/* | |
* | |
* Adventure Creator | |
* by Chris Burton, 2013-2020 | |
* | |
* "ActionCheckTansform.cs" | |
* | |
* This is a blank action template, which has two outputs. | |
* | |
*/ |
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# Split data set in (tumor, normal) pair | |
dsT <- sapply(strsplit(Tumorsamples, split = ".", fixed=TRUE),"[[", 1) | |
dsN <- sapply(strsplit(Normalsamples, split = ".", fixed=TRUE),"[[", 1) | |
# Load all samples (in case more samples were downloaded) | |
cdf <- AffymetrixCdfFile$byChipType(chipType, tags="Full") | |
print("print(cdf)") | |
print(cdf) |
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structure(list(chromosome = c(19L, 12L, 5L, 3L, 12L, 16L, 13L, | |
19L, 3L, 13L, 3L, 20L, 7L, 22L, 7L, 13L, 22L, 8L, 18L, 17L, 5L, | |
7L, 12L, 22L, 3L, 3L, 3L, 8L, 2L, 14L), tcnId = c(1L, 5L, 4L, | |
10L, 1L, 1L, 7L, 1L, 19L, 4L, 11L, 1L, 8L, 1L, 4L, 9L, 1L, 2L, | |
1L, 15L, 7L, 10L, 3L, 1L, 7L, 16L, 17L, 4L, 1L, 2L), dhId = c(1L, | |
1L, 1L, 1L, 1L, 3L, 1L, 3L, 1L, 1L, 3L, 1L, 1L, 4L, 1L, 1L, 1L, | |
1L, 1L, 1L, 1L, 1L, 1L, 3L, 1L, 1L, 1L, 1L, 1L, 1L), tcnStart = c(90911, | |
23976225, 142298217.5, 46849231, 150443, 7050355.5, 94835569, | |
22613582.5, 197838508.5, 32124142.5, 66147533, 61306, 7770125.5, | |
35989643.5, 3453496, 110811550.5, 16052529, 135722, 11543, 21125890.5, |
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ID Length TN | |
95471 310073 Normal | |
17890 262629 Tumor | |
94641 127623 Normal | |
51751 421808 Normal | |
15359 1344925 Tumor | |
11498 249292 Normal | |
8218 232724 Normal | |
141810 209089 Normal | |
28431 379404 Normal |