gedankenstuecke

<script type="text/javascript">
  // Trying to help @gedankenstuecke here. A bit hard because I don’t speak Rails (neither Ruby) and can’t try live what the output looks like.
  $(function () {
    $("#<%=p.object.phenotype_id.to_json%>").autocomplete({
      source: <%=raw(Phenotype.find_by_id(p.object.phenotype_id).known_phenotypes.to_json)%>
    });
  });
</script>

gedankenstuecke

Started GET "/users/6/edit" for $IP at 2011-09-29 10:41:56 -0700
  Processing by UsersController#edit as HTML
  Parameters: {"id"=>"6"}
  User Load (2.7ms)  SELECT "users".* FROM "users" WHERE "users"."persistence_token" = 'some_token' LIMIT 1
  User Load (4.1ms)  SELECT "users".* FROM "users" WHERE "users"."id" = 6 LIMIT 1
  CACHE (0.0ms)  SELECT "users".* FROM "users" WHERE "users"."id" = 6 LIMIT 1
  CACHE (0.0ms)  SELECT "users".* FROM "users" WHERE "users"."id" = 6 LIMIT 1
Rendered shared/_error_messages.html.erb (0.1ms)
  UserPhenotype Load (0.3ms)  SELECT "user_phenotypes".* FROM "user_phenotypes" WHERE ("user_phenotypes".user_id = 6)
  Phenotype Load (4.2ms)  SELECT "phenotypes".* FROM "phenotypes" WHERE "phenotypes"."id" = 3 LIMIT 1

gedankenstuecke

Started GET "/users/6/edit" for $IP at 2011-09-29 11:05:57 -0700
  Processing by UsersController#edit as HTML
  Parameters: {"id"=>"6"}
  User Load (3.2ms)  SELECT "users".* FROM "users" WHERE "users"."id" = 6 LIMIT 1
  CACHE (0.0ms)  SELECT "users".* FROM "users" WHERE "users"."id" = 6 LIMIT 1
  CACHE (0.0ms)  SELECT "users".* FROM "users" WHERE "users"."id" = 6 LIMIT 1
  CACHE (0.0ms)  SELECT "users".* FROM "users" WHERE "users"."id" = 6 LIMIT 1
Rendered shared/_error_messages.html.erb (0.1ms)
  UserPhenotype Load (2.3ms)  SELECT "user_phenotypes".* FROM "user_phenotypes" WHERE ("user_phenotypes".user_id = 6)
  Phenotype Load (2.9ms)  SELECT "phenotypes".* FROM "phenotypes" WHERE "phenotypes"."id" = 3 LIMIT 1

gedankenstuecke

# usage: just run "./compare_snps.py 23andme_file_1.txt 23andme_file_2.txt"

import sys

def read_23andme(filename):
	handle = open(filename,"r")
	snps = {}
	for line in handle:
		if line[0] != "#":
			line_array = line.split("\t")

gedankenstuecke

# create a 23andMe-style file that includes all openSNP-listed SNPs out of the denisova-genome

import sys

class snp():
	def __init__(self,chromosome,position,major_allele,minor_allele,rsid):
		self.chromosome = chromosome
		self.position = position
		self.major_allele = major_allele
		self.minor_allele = minor_allele

gedankenstuecke

{"id":1,"characteristic":"Eye color","description":"There is still work done on the genetics of the eye color and it is already known that different genes participate in the outcome and some associated SNPs have already been identified. \r\n\r\nFor more information about the genetics of eye color you can read the Wikipedia: http://en.wikipedia.org/wiki/Eye_color \r\n\r\nThe SNPedia did already start a project to self-report eye color. See: http://www.snpedia.com/index.php/Eye_color","known_variations":["Brown","Blue-grey","Green","Blue","Blue-green","Hazel","Mixed","Brown-green","Dark blue","Dark brown","Blue-green ","Light-mixed green","Hazel::Light brown","Braun","Blue grey","Gray-blue","Green-brown","Gray-blue with a center ring of yellowish light brown","Indeterminate brown-green with a subtle grey caste","Blue-grey; broken amber collarette"],"users":[{"user_id":6,"variation":"brown"},{"user_id":8,"variation":"Brown"},{"user_id":11,"variation":"brown"},{"user_id":13,"variation":"brown"},{"user_id":14,"var

gedankenstuecke

[{"id":1,"characteristic":"Eye color","known_variations":["Brown","Blue-grey","Green","Blue","Blue-green","Hazel","Mixed","Brown-green","Dark blue","Dark brown","Blue-green ","Light-mixed green","Hazel::Light brown","Braun","Blue grey","Gray-blue","Green-brown","Gray-blue with a center ring of yellowish light brown","Indeterminate brown-green with a subtle grey caste","Blue-grey; broken amber collarette"],"number_of_users":152},{"id":3,"characteristic":"Handedness","known_variations":["Right-handed","Left-handed","Ambidexterous","Left-handed for small motor movement, writing. right-handed for large motor movement, throwing","Right","Right handed","Right handed, only in golfsport left handed!"],"number_of_users":131},{"id":15,"characteristic":"Height","known_variations":["Tall ( >180cm )","188cm","Average  173cm","5'1\" or 155cm","Average ( 165cm < x < 180cm )","183 cm","Average","180cm","5'6\"","Tall ","5'10''","190cm","6'3\"","177.8 cm","193cm","188 cm","5'10\"","189cm","5'2\"","179cm","180 cm","5'5\"","5'4\

gedankenstuecke

{"snp":{"name":"rs1800795","chromosome":"7","position":"22733170","annotations":{"mendeley":[{"author":"Brandon L Pierce","title":"C-reactive protein, interleukin-6, and prostate cancer risk in men aged 65 years and older.","publication_year":2009,"number_of_readers":2,"open_access":false,"url":"http://www.mendeley.com/research/creactive-protein-interleukin6-and-prostate-cancer-risk-in-men-aged-65-years-and-older/","doi":null},{"author":"Petter Ljungman","title":"DNA variants, plasma levels and variability of interleukin-6 in myocardial infarction survivors: results from the AIRGENE study.","publication_year":2009,"number_of_readers":3,"open_access":false,"url":"http://www.mendeley.com/research/dna-variants-plasma-levels-and-variability-of-interleukin6-in-myocardial-infarction-survivors-results-from-the-airgene-study/","doi":null},{"author":"Joanne P Lagmay","title":"Prognostic significance of interleukin-6 single nucleotide polymorphism genotypes in neuroblastoma: rs1800795 (promoter) and rs8192284 (receptor

gedankenstuecke

DATE; STEPS; NOTES
2013-01-18; 7542
2013-01-17; 3846
2013-01-16; 10765
2013-01-15; 16252
2013-01-14; 10039
2013-01-13; 11016
2013-01-12; 6307
2013-01-11; 3415
2013-01-10; 6269

gedankenstuecke

date  fitbit	fuelband
2012-11-16	14161	12958
2012-11-17	15224	14487
2012-11-18	4690	4491
2012-11-19	16504	16925
2012-11-20	11906	12314
2012-11-21	11559	10322
2012-11-22	11095	9472
2012-11-23	7396	7548
2012-11-24	13568	12194