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2 The Lancet 1823 | |
19 The Lancet 1824 | |
78 The Lancet 1825 | |
97 The Lancet 1826 | |
152 The Lancet 1827 | |
257 The Lancet 1828 | |
273 The Lancet 1829 | |
248 The Lancet 1830 | |
307 The Lancet 1831 | |
388 The Lancet 1832 |
require 'terrier' | |
require 'fileutils' | |
resolved_dois = Hash.new | |
base_name = ARGV[0] | |
FileUtils.touch(base_name + ".resolved") | |
File.open(base_name+".resolved", "r") do |f| | |
f.each_line do |line| |
### Keybase proof | |
I hereby claim: | |
* I am gedankenstuecke on github. | |
* I am gedankenstuecke (https://keybase.io/gedankenstuecke) on keybase. | |
* I have a public key whose fingerprint is F7FC 60B7 8C29 19F2 F94A CD6E 227A 9EA1 AF38 635C | |
To claim this, I am signing this object: |
Dear Mx Advertiser, | |
The purpose of this letter is to welcome you on behalf of the Organizing Committee, to be a CROWDFUNDING CONTRIBUTOR at the International Crowdfunding Campaign of Jon & Bastian: https://igg.me/p/1861431/twtr/1756182 | |
Based on your eminence in this field, we are glad to have your money. | |
Benefits: | |
➢ All accepted donations will be published in our campaign reports | |
➢ Each donation will help us get to opencon! | |
➢ Certification by the International Invoicing Committee of Indiegogo | |
➢ Furnish funds to the fellow scientist for the on-going networking work | |
➢ The warm fuzzy feeling of helping the eminent experts in the field |
LOCUS NC_024258 155554 bp DNA circular PLN 02-JUL-2014 | |
DEFINITION Fragaria iinumae voucher fc199s5 plastid, complete genome. | |
ACCESSION NC_024258 | |
VERSION NC_024258.1 GI:657171703 | |
DBLINK BioProject: PRJNA252471 | |
KEYWORDS RefSeq. | |
SOURCE plastid Fragaria iinumae | |
ORGANISM Fragaria iinumae | |
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; | |
Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; |
#!/usr/bin/env bash | |
docker stop postgres | |
docker rm postgres | |
docker stop redis | |
docker rm redis | |
docker stop snpr | |
docker rm snpr | |
docker stop sidekiq | |
docker rm sidekiq |
# this one works, plink is in cwd + conversion to BED files works flawlessly | |
for f in usable_files: | |
# gid is the genotype-ID | |
gid = f.split("/")[-1].split("_")[1].replace("file","") | |
# converts the genotyping file to plink format, using the gid as sample name | |
call = "./plink --23file "+ f + " F" + gid + "ID" + gid + "I 1" | |
call += " --out 23andme_plink/genotypeid_" + gid | |
print "convert gid " + gid | |
subprocess.call(call,shell=True) |
[global] | |
#Mate-pair mapping parameters: | |
bowtie2_threads=1 | |
bowtie2_read1=clad9_ast1_matepair1.fq | |
bowtie2_read2=clad9_ast1_matepair2.fq | |
bowtie2_maxins=5500 | |
bowtie2_minins=4500 | |
#CE-stat computation parameters: |
(gdb) run | |
Starting program: /home/bastian/bin/Metassembler/bin/mateAn -m 5000 -s 500 -p ./MIRA/CEstat/MIRA.ce/MIRA -e 0 -z 3 -q 20 -N 1 -f 6 -c 0.05 -n 30 -a ./MIRA/CEstat/BWTaln/MIRA.mtp.sam | |
---------- Parameters: | |
---------------------- | |
-a : ./MIRA/CEstat/BWTaln/MIRA.mtp.sam | |
-m : 5000 | |
-s : 500 | |
-p : ./MIRA/CEstat/MIRA.ce/MIRA | |
-e : 0 | |
-z : 3 |