graingert

use Bio::DB::Sam;

# high level API
my $sam = Bio::DB::Sam->new(-bam  =>"data/ex1.bam",
                         -fasta=>"data/ex1.fa",
                         );

my @targets    = $sam->seq_ids;
my @alignments = $sam->get_features_by_location(-seq_id => 'seq2',
                                             -start  => 500,

graingert

<?xml version="1.0"?>


<!DOCTYPE rdf:RDF [
    <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
    <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
    <!ENTITY bo "http://graingert.co.uk/broadcast-ontology/" >
    <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
]>

graingert

These fully centralized systems have a simple design and implementation however, there are some key issues that affect the users of the system - both merchants and customers - two of which are discussed here.

The first issue is that the trusted entity has a legal responsibility to handle ``charge-backs'' or reverse transactions, the cost for this escrow service - in which the central authority acts as an arbiter in disputes - is placed on the customer as a transfer fee or to the merchant as a fine, or worse\cite{violin}\footnote{\url{http://www.guardian.co.uk/world/2012/jan/04/paypal-buyer-destroys-violin}}.

The second major disadvantage of a centralized system is that it allows for  a single point of failure resulting in a lack of reliability from the  perspective of the user.  The central authority has complete control over the status of the users' account - that authority can freeze the funds of that account at their discretion according to their own terms of service, this can include pressure from legal

graingert

from uuid import uuid1
from time import time

def main():
    test = dict()
    limit = 10 ** 10
    while limit:
        limit -= 1
        x = {n:uuid1().hex for n in range(15)}
        if len(set(x.values())) != len(x.keys()):

graingert

>>> def f():
...     try:
...         g()
...     except:
...         raise
... 
>>> def g():
...     try:
...         1/0
...     except:

graingert

{
  "version": "0.15",
  "groups": [
    {
      "name": "XKCD",
      "urls": [],
      "substitutions": [
        {
          "input": "witnesses",
          "inputType": "text",

graingert

[INFO    ] Executing state npm.installed for bower
[INFO    ] Executing command 'npm --version' in directory '/root'
[DEBUG   ] output: 1.3.14
[INFO    ] Executing command 'npm list --json --global "bower"' in directory '/root'
[ERROR   ] Command 'npm list --json --global "bower"' failed with return code: 1
[ERROR   ] stdout: {}
[ERROR   ] Error installing 'bower': 

graingert

$ pip install drf-nested-routers==0.1.1
Downloading/unpacking drf-nested-routers==0.1.1
  Downloading drf-nested-routers-0.1.1.tar.gz
  Running setup.py egg_info for package drf-nested-routers
    
Requirement already satisfied (use --upgrade to upgrade): djangorestframework in /home/graingert/.virtualenvs/zonza/lib/python2.7/site-packages (from drf-nested-routers==0.1.1)
Installing collected packages: drf-nested-routers
  Running setup.py install for drf-nested-routers
    
Successfully installed drf-nested-routers

graingert

import gc


def super_patch(old_obj, new_obj):
    if old_obj is new_obj:
        return
    gc.collect()
    for referrer_obj in gc.get_referrers(old_obj):
        if hasattr(referrer_obj, "iteritems"):
            for key, value in referrer_obj.iteritems():

graingert

$ nosetests test_stuff.py
E.E
======================================================================
ERROR: test_assert_true (test_stuff.TestFail)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/vagrant/test_stuff.py", line 17, in test_assert_true
    raise Exception
Exception