Cell6.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "elapsed time: 8 ms (align sdist fft)\n",
      "elapsed time: 43 ms (align sdist naive)\n",
      "elapsed time: 8 ms (align sdist fft)\n",
      "elapsed time: 43 ms (align sdist naive)\n",
      "elapsed time: 8 ms (align sdist fft)\n",
      "elapsed time: 43 ms (align sdist naive)\n",
      "elapsed time: 8 ms (align sdist fft)\n",
      "elapsed time: 44 ms (align sdist naive)\n",
      "elapsed time: 8 ms (align sdist fft)\n",
      "elapsed time: 43 ms (align sdist naive)\n"
     ]
    }
   ],
   "source": [
    "query_gpu, subject_gpu = cp.asarray(query), cp.asarray(subject)\n",
    "\n",
    "for _ in range(num_repeats):\n",
    "    with ra.util.Timer(\"align sdist fft\"):\n",
    "        ying = ra.ED.sdist(query_gpu, subject_gpu, mode=\"fft\")\n",
    "    with ra.util.Timer(\"align sdist naive\"):\n",
    "        yang = ra.ED.sdist(query_gpu, subject_gpu, mode=\"naive\")\n",
    "        \n",
    "assert(cp.allclose(ying, yang))"
   ]
  }
 ],
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