Mark Hiner hinerm
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| Fiji is GPL v3 | |
| SCIFIO is bsd2 | |
| scifio-bf-compat is gplv2 | |
| scifio-omero is gplv2 | |
| scifio-tutorials is cc0 | |
| scifio-lifesci is gplv2 | |
| scijava is bsd2 | |
| scripting-r is gplv2 |
hinerm
/ fiji-failures
Created
November 7, 2014 20:05
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| [INFO] Scanning for projects... | |
| [INFO] | |
| [INFO] Using the builder org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder with a thread count of 1 | |
| [INFO] | |
| [INFO] ------------------------------------------------------------------------ | |
| [INFO] Building Top-level Fiji project 2.0.0-beta-1-SNAPSHOT | |
| [INFO] ------------------------------------------------------------------------ | |
| [INFO] | |
| [INFO] --- scijava-maven-plugin:0.2.1-SNAPSHOT:verify-no-snapshots (default-cli) @ fiji --- | |
| [ERROR] Could not resolve dependency: Dependency {groupId=sc.fiji, artifactId=fiji-lib, version=2.0.0, type=jar} of path: |
hinerm
/ Calculate_UnMixing_Fiji.m
Last active
August 29, 2015 14:05
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| % @matrix Image | |
| % @matrix dSpectrum | |
| % @matrix aSpectrum | |
| % @matrix tSpectrum | |
| % @double dQY | |
| % @double aQY | |
| % @double BackGround | |
| % @double Threshold | |
| % @OUTPUT double[] KDA | |
| % @OUTPUT double[] KAD |
hinerm
/ scifio javadoc warnings
Last active
December 25, 2015 04:38
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| [WARNING] Javadoc Warnings | |
| [WARNING] /Users/mhiner/loci/scifio/scifio/src/main/java/io/scif/formats/TIFFFormat.java:990: warning - Tag @link: can't find initStandardMetadata(Metadata) in io.scif.formats.TIFFFormat.BaseTIFFParser | |
| [WARNING] /Users/mhiner/loci/scifio/scifio/src/main/javadoc/io/scif/package-info.java:347: warning - Tag @link: reference not found: Plane | |
| [WARNING] /Users/mhiner/loci/scifio/scifio/src/main/javadoc/io/scif/package-info.java:347: warning - Tag @link: reference not found: RandomAccessInputStream | |
| [WARNING] /Users/mhiner/loci/scifio/scifio/src/main/javadoc/io/scif/img/package-info.java:51: warning - Tag @link: reference not found: net.imglib2.img.ImgPlus | |
| [WARNING] /Users/mhiner/loci/scifio/scifio/src/main/javadoc/io/scif/img/package-info.java:51: warning - Tag @link: reference not found: net.imglib2.img.ImgPlus | |
| [WARNING] /Users/mhiner/loci/scifio/scifio/src/main/javadoc/io/scif/img/package-info.java:51: warning - Tag @link: reference not found: io.scif.io.img.ImgOpener | |
| [WARNING] /Users/m |
hinerm
/ FollowedClasses
Last active
December 15, 2015 11:49
FollowedClasses - a list of classes that have SCIFIO equivalents. git log --follow should work for these.
NewClasses - a parallel list of the modern classes
follow.sh - a script that will compare the log --follow results of FollowedClasses and NewClasses and log the results.
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| components/loci-legacy/src/loci/common/AbstractNIOHandle.java | |
| components/loci-legacy/src/loci/common/BZip2Handle.java | |
| components/loci-legacy/src/loci/common/ByteArrayHandle.java | |
| components/loci-legacy/src/loci/common/CBZip2InputStream.java | |
| components/loci-legacy/src/loci/common/CRC.java | |
| components/loci-legacy/src/loci/common/CaseInsensitiveLocation.java | |
| components/loci-legacy/src/loci/common/Constants.java | |
| components/loci-legacy/src/loci/common/DataTools.java | |
| components/loci-legacy/src/loci/common/DateTools.java | |
| components/loci-legacy/src/loci/common/DebugTools.java |
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| #!/bin/bash | |
| # | |
| # History checking script | |
| # | |
| # This script checks out each commit that | |
| # exists on a dev_branch but not a base_branch. | |
| # "ant clean tools" is run on that branch, | |
| # and a log file is written with the results | |
| # of the build to | |
| # <log_dir>/<PASSED/FAILED><commit hash><commit message>.log |
hinerm
/ BFITKTest.cxxitkLSMBioFormatsImageIOTest.cxx
Created
October 16, 2012 17:55
bf-itk-pipe time splitting example
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| /* | |
| * #%L | |
| * Bio-Formats plugin for the Insight Toolkit. | |
| * %% | |
| * Copyright (C) 2010 - 2012 Insight Software Consortium, and Open Microscopy | |
| * Environment: | |
| * - Board of Regents of the University of Wisconsin-Madison | |
| * - Glencoe Software, Inc. | |
| * - University of Dundee | |
| * %% |
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