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import strformat
import tables

# A small program to make using 256 colors in Nim less painful.
# Original ZSH version from:
# P.C. Shyamshankar <sykora@lucentbeing.com>
# Copied from https://github.com/sykora/etc/blob/master/zsh/functions/spectrum/

# Nim rewrite by Laszlo Szathmary <jabba.laci@gmail.com>
# thanks to narimiran and kickeroo for making the code more idiomatic Nim code

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import pandas as pd
import numpy as np
from tabulate import tabulate

df = pd.DataFrame(np.random.random((4,3)), columns=['A','B','C'])
print("foo")
return(tabulate(df, headers="keys", tablefmt="orgtbl"))

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$ rlwrap csi

#;1> (import (prefix (chicken process) p:))
; loading /usr/local/Cellar/chicken/5.0.0/lib/chicken/9/chicken.process.import.so ...

#;2> (p:system "ls")
Applications			Library				bin
0

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curl --header 'Authorization: token INSERTACCESSTOKENHERE' \
     --header 'Accept: application/vnd.github.v3.raw' \
     --remote-name \
     --location https://api.github.com/repos/owner/repo/contents/path

# Example...

TOKEN="INSERTACCESSTOKENHERE"
OWNER="BBC-News"
REPO="responsive-news"

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#!/bin/sh

# tools-deps equivalent of `lein-try`
#
# Additionally see:
#
# https://github.com/hagmonk/find-deps -- what user/find-deps links to
# https://github.com/juxt/edge/blob/master/main/aliases/rebel/edge/rebel/main.clj
# https://clojars.org/seancorfield/depstar -- clj-based uberjarrer

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p = subprocess.Popen(shlex.split(cmd), stdout=subprocess.PIPE)
# Grab stdout line by line as it becomes available.  This will loop until
# p terminates.
while p.poll() is None:
    l = p.stdout.readline() # This blocks until it receives a newline.
    print l
# When the subprocess terminates there might be unconsumed output
# that still needs to be processed.
print p.stdout.read()

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Burndown Chart

A Pen by Demetri Ganoff on CodePen.

License.

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task GenotypeGVCFs {
  File workspace_tar
  String interval

  String output_vcf_filename

  String gatk_path

  File ref_fasta
  File ref_fasta_index

indraniel

;; TRAMP gcloud ssh
(add-to-list 'tramp-methods
  '("gssh"
    (tramp-login-program        "gssh")
    (tramp-login-args           (("%h")))
    (tramp-async-args           (("-q")))
    (tramp-remote-shell         "/bin/sh")
    (tramp-remote-shell-args    ("-c"))
    (tramp-gw-args              (("-o" "GlobalKnownHostsFile=/dev/null")
                                 ("-o" "UserKnownHostsFile=/dev/null")

indraniel

Google Cloud Storage backup tutorial

Introduction

This tutorial shows how to make backups to Google Cloud Storage. The backups are:

• automatic
• stored off site
• incremental