irisdyoung

diff --git a/xfel/ui/components/xfel_gui_controls.py b/xfel/ui/components/xfel_gui_controls.py
index 2961dc5..02dca03 100644
--- a/xfel/ui/components/xfel_gui_controls.py
+++ b/xfel/ui/components/xfel_gui_controls.py
@@ -642,13 +642,13 @@ class RunBlock(CtrlBase):
 class PHILBox(CtrlBase):
   def __init__(self, parent,
                btn_import=True,
-               btn_import_size=(120, -1),
+               btn_import_size=(150, -1),

irisdyoung

snippet for selecting only differing residues based on an alignment: run the one-liner below on a file “seq” containing the alignment lines only, with all newline characters removed:

export j=0; cat seq | while read -n 1 char; do export j=$((j+1)); if [ "$char" != "*" ]; then echo -n "${j},"; fi; done; echo

in pseudocode, that's:

1. set up a counter starting at 0

2. feed me the contents of a file called "seq"

irisdyoung

#! /bin/bash
# @idyoung 2020.07.20
# Use this script in place of `ls` to list directories in a format 06Jun2020 in chronological order

export matches=`ls | grep "^[0-9][0-9][[:alpha:]][[:alpha:]][[:alpha:]][0-9][0-9][0-9][0-9]"`
export prefixed_matches=""
for match in $matches; do
     export day=${match:0:2}
     export month_alpha=${match:2:3}
     case $month_alpha in

irisdyoung

#! /bin/bash
# identify wherever $1 is found but not $2

for expected in `find . -name $1 | sed "s:${1}:${2}:"`
  do export found=`ls $expected 2> /dev/null`
  if [ ! "$found" == "$expected" ]; then
    echo $expected
  fi
done

irisdyoung

#! /bin/bash

recursive_diff() {
  diff $1 $2 > tmptmptmp.diff
  export diffsize=`ls -l tmptmptmp.diff | awk '{ print $5 }'`
  while [ ! "$diffsize" == "$newdiffsize" ]; do
    export diffsize=`ls -l tmptmptmp.diff | awk '{ print $5 }'`
    cat tmptmptmp.diff | grep "^<" | cut -c 3- > tmptmptmp1.phil
    cat tmptmptmp.diff | grep "^>" | cut -c 3- > tmptmptmp2.phil
    diff tmptmptmp1.phil tmptmptmp2.phil > tmptmptmp.diff