j1n3l0

# steps required to run pfind and save the output
# 2010-07-10
#
pfind $PROJECT
cd $PROJECT_DIR
update_caf
cat ./CAF/caf.raw | caf2clipped_fasta -fasta $PROJECT.fa

j1n3l0

# project euler problem 001 in rakudo
[+](1..^1000).grep({ $_ % any(3, 5) == 0 })

j1n3l0

# what should happen when i assign the result of this function to:
# - an array
# - a hash
multi function ( Str $string, Int $times ) returns Array { gather for 1 .. $times { take $string } }
my @test = function( 'hi', 4 );
my %test = function( 'hi', 4 );

j1n3l0

#!/usr/bin/env ruby
require 'rubygems'
require 'yaml'
require 'pp'

pp YAML.load_file( 'data.yml' )['development']

j1n3l0

#!/usr/bin/env perl
use 5.012;
use Test::Most;

{
  package Foo;
  use Moose;
  has bar =>
    ( is => 'ro', isa => 'Str', required => 1 );
  around bar => sub {

j1n3l0

require 'rubygems'
require 'rake'

desc 'load specific version of allele_image'
task :load_version, [ :file, :version ] do |task, args|
  args.with_defaults( :version => '0.1.1' )
  raise 'Please provide input file' unless args[:file]
  gem 'allele_image', "= #{ args[:version] }"
  require 'allele_image'
  AlleleImage::Image.new( args[:file] ).render.write( args[:file].gsub( /\.\w+$/, '.png' ) )

j1n3l0

// make the escells.rest rows red navigating from the toggle
jQuery("a.escells_toggle").each( function () {
    var escells = jQuery(this).parent().children("table").children("tbody.escells").children();

    // give it a background color    
    escells.slice(2, escells.size()).css("background-color", "red");
});

j1n3l0

git svn clone -s $URL_TO_SVN_REPO repo_name
cd repo_name
git reset --hard remotes/trunk

j1n3l0

#!/usr/bin/env ruby
# An example of how to use the genbank generating code from ruby
genbank = %x[perl -mHTGT::Utils::GenerateGenBankString=:all -e 'print generate_genbank_string(@ARGV)' #{ ARGV.join(' ') }]
puts genbank

j1n3l0

require 'rubygems'
require 'getoptlong'
require 'pp'

@database    = ENV["HTGT_ENV"] == 'Devel' ? 'development' : 'production'
@debug       = false
@config_file = '/path/to/config.yml'

opts = GetoptLong.new(
    [ '--pipeline',    '-p', GetoptLong::REQUIRED_ARGUMENT ],