jakeenk

## aweSAM_collapser
#!/bin/bash

# ******REQUIRES SAMTOOLS******

#This is a sam assembly collapser using coordinates and strand as the "unique insert" identifiers, keeping the read with the highest mapping quality
#Written/assembled by Jake Enk and Alison Devault (and named by Nathalie Mouttham) June 3, 2013

# Usage: $ aweSAM_collapser [input samfile] [output collapsed samfile]

# PROCESS:
	#!/bin/bash

	# ****REQUIRES SAMTOOLS****

	#This is a sam assembly collapser using coordinates and strand as the "unique insert" identifiers, keeping the read with the highest mapping quality
	#Written/assembled by Jake Enk and Alison Devault (and named by Nathalie Mouttham) June 3, 2013

	# Usage: $ aweSAM_collapser [input samfile] [output collapsed samfile]

	# PROCESS: