[ Launch: tributary-transition ] 6106999 by jandot
Jan Aerts jandot
jandot
/ gist:165714
Created
August 11, 2009 09:10
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| require 'open-uri' | |
| require 'json' | |
| require 'mongo' | |
| class FriendFeed | |
| attr_accessor :user, :database, :collection | |
| def initialize(user, database, collection) | |
| @user = user | |
| @database = XGen::Mongo::Driver::Mongo.new.db(database) |
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| require 'rubygems' | |
| require '/nfs/team29/ruby-ensembl-api/lib/ensembl' | |
| codon_table = Bio::CodonTable[1] | |
| include Ensembl::Core | |
| DBConnection.connect('homo_sapiens', 52) | |
| STDIN.each do |line| | |
| gene_name, transcript_acc, chr, pos, ref, alleles = line.chomp.split(/\t/) |
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| // Suppose we have a collection "my_coll" with documents that look like this (we're talking about things that have positions on chromosomes): | |
| // { _id: "1_123", | |
| // chr: "1", | |
| // pos: 123, | |
| // accession_in_external_db: "an_id" | |
| // }, | |
| // { _id: "1_456", | |
| // chr: "1", | |
| // pos: 456 | |
| // }, |
jandot
/ ps1_git_coloured.rb
Created
April 19, 2010 15:36
Add git branch to bash prompt. Green if OK; red if uncommitted changes or if ahead of master.
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| #Based on http://www.furmanek.net/39/unix-prompt-for-usage-with-git/ | |
| green = "\033[0;32m" | |
| reset = "\033[0m" | |
| red = "\033[0;31m" | |
| current_branch = `git branch 2>/dev/null`.grep(/^\*/).first | |
| if current_branch | |
| branch_name = current_branch.gsub(/^\*\s*/,'').strip | |
| status_lines = `git status`.split(/\n/) | |
| status = ( status_lines.length == 2 ) ? 'clean' : 'dirty' |
[ Launch: sv-graph ] 6114799 by jandot
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