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September 27, 2023 20:29
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| { | |
| "cells": [ | |
| { | |
| "cell_type": "code", | |
| "execution_count": 1, | |
| "id": "bb89df8d-3a0b-478c-a7fc-f846b673d819", | |
| "metadata": { | |
| "tags": [] | |
| }, | |
| "outputs": [], | |
| "source": [ | |
| "# !pip install pip install git+https://github.com/jbusecke/pangeo-forge-esgf.git@beam-refactor" | |
| ] | |
| }, | |
| { | |
| "cell_type": "code", | |
| "execution_count": 2, | |
| "id": "929af61e-0d0b-4a18-a1c7-7953d1c35faf", | |
| "metadata": { | |
| "tags": [] | |
| }, | |
| "outputs": [], | |
| "source": [ | |
| "import gcsfs\n", | |
| "import zarr\n", | |
| "from typing import List\n", | |
| "cache_bucket = \"leap-scratch/data-library/cache\"\n", | |
| "target_bucket = \"leap-persistent-ro/data-library/cmip6-testing\"\n", | |
| "\n", | |
| "\n", | |
| "def get_job_details(jobid: str):\n", | |
| " pass\n", | |
| "\n", | |
| "def get_cached_files(iid: str) -> List[str]:\n", | |
| " fs = gcsfs.GCSFileSystem()\n", | |
| " glob_wildcard = '*'.join(['']+iid.lower().split('.')[2:]+[''])\n", | |
| " # this takes quite long...\n", | |
| " all_files = fs.glob(f\"{cache_bucket}/{glob_wildcard}\")\n", | |
| " return [f\"gs://{f}\" for f in all_files]\n", | |
| "\n", | |
| "def get_written_store(jobid: str, iid: str) -> str:\n", | |
| " subfolder = '-'.join(jobid.split('-')[:-1])\n", | |
| " return f\"gs://{target_bucket}/{subfolder}/{iid}.zarr\"" | |
| ] | |
| }, | |
| { | |
| "cell_type": "code", | |
| "execution_count": 3, | |
| "id": "48b89aa4-c348-4904-a67f-04a396ba0e18", | |
| "metadata": { | |
| "tags": [] | |
| }, | |
| "outputs": [], | |
| "source": [ | |
| "iids = ['CMIP6.ScenarioMIP.CSIRO-ARCCSS.ACCESS-CM2.ssp585.r1i1p1f1.day.pr.gn.v20210317',\n", | |
| "'CMIP6.ScenarioMIP.CSIRO.ACCESS-ESM1-5.ssp585.r4i1p1f1.day.sfcWind.gn.v20210318',\n", | |
| "'CMIP6.ScenarioMIP.CSIRO.ACCESS-ESM1-5.ssp585.r6i1p1f1.day.sfcWind.gn.v20210318',\n", | |
| "'CMIP6.ScenarioMIP.CSIRO.ACCESS-ESM1-5.ssp585.r4i1p1f1.day.pr.gn.v20210318',\n", | |
| "'CMIP6.ScenarioMIP.CSIRO.ACCESS-ESM1-5.ssp585.r10i1p1f1.day.pr.gn.v20210318',\n", | |
| "'CMIP6.CMIP.MRI.MRI-ESM2-0.historical.r2i1p1f1.day.pr.gn.v20190603',\n", | |
| "'CMIP6.CMIP.MRI.MRI-ESM2-0.historical.r3i1p1f1.day.pr.gn.v20190603',\n", | |
| "'CMIP6.CMIP.MRI.MRI-ESM2-0.historical.r4i1p1f1.day.pr.gn.v20190603',\n", | |
| "'CMIP6.CMIP.MRI.MRI-ESM2-0.historical.r5i1p1f1.day.pr.gn.v20190603',\n", | |
| "]" | |
| ] | |
| }, | |
| { | |
| "cell_type": "code", | |
| "execution_count": 4, | |
| "id": "e892d48f-a0b1-42b1-9e8f-268fd4fe8bfe", | |
| "metadata": { | |
| "tags": [] | |
| }, | |
| "outputs": [ | |
| { | |
| "name": "stdout", | |
| "output_type": "stream", | |
| "text": [ | |
| "pangeo_forge_esgf.recipe_inputs - INFO - Checking responsiveness of search_nodes=['http://esgf-node.llnl.gov/esg-search/search', 'http://esgf-data.dkrz.de/esg-search/search', 'http://esgf-node.ipsl.upmc.fr/esg-search/search', 'http://esgf-index1.ceda.ac.uk/esg-search/search', 'http://esg-dn1.nsc.liu.se/esg-search/search', 'http://esgf.nci.org.au/esg-search/search']\n", | |
| "pangeo_forge_esgf.recipe_inputs - INFO - responsive_search_nodes=['http://esgf-node.llnl.gov/esg-search/search', 'http://esgf-data.dkrz.de/esg-search/search', 'http://esgf-node.ipsl.upmc.fr/esg-search/search', 'http://esg-dn1.nsc.liu.se/esg-search/search', 'http://esgf.nci.org.au/esg-search/search']\n", | |
| "pangeo_forge_esgf.recipe_inputs - INFO - Requesting urls\n" | |
| ] | |
| }, | |
| { | |
| "name": "stderr", | |
| "output_type": "stream", | |
| "text": [ | |
| "100%|██████████| 45/45 [00:10<00:00, 4.25it/s]" | |
| ] | |
| }, | |
| { | |
| "name": "stdout", | |
| "output_type": "stream", | |
| "text": [ | |
| "pangeo_forge_esgf.recipe_inputs - INFO - Processing responses\n", | |
| "pangeo_forge_esgf.recipe_inputs - INFO - Processing responses: Expected files per iid\n", | |
| "pangeo_forge_esgf.recipe_inputs - INFO - Processing responses: Check for missing iids\n", | |
| "pangeo_forge_esgf.recipe_inputs - WARNING - Not able to find results for the following 4 iids: ['CMIP6.CMIP.MRI.MRI-ESM2-0.historical.r5i1p1f1.day.pr.gn.v20190603', 'CMIP6.CMIP.MRI.MRI-ESM2-0.historical.r3i1p1f1.day.pr.gn.v20190603', 'CMIP6.CMIP.MRI.MRI-ESM2-0.historical.r2i1p1f1.day.pr.gn.v20190603', 'CMIP6.CMIP.MRI.MRI-ESM2-0.historical.r4i1p1f1.day.pr.gn.v20190603']\n", | |
| "pangeo_forge_esgf.recipe_inputs - INFO - Processing responses: Flatten results\n", | |
| "pangeo_forge_esgf.recipe_inputs - INFO - Processing responses: Group results\n", | |
| "pangeo_forge_esgf.recipe_inputs - INFO - Choosing one url per file\n", | |
| "pangeo_forge_esgf.recipe_inputs - WARNING - This method seems to be unreliable for getting many urls. \n", | |
| "If you are getting less datasets than you expect, try 'first' instead.\n", | |
| "pangeo_forge_esgf.recipe_inputs - INFO - Find first responsive url for each file\n" | |
| ] | |
| }, | |
| { | |
| "name": "stderr", | |
| "output_type": "stream", | |
| "text": [ | |
| "\n", | |
| "100%|██████████| 8/8 [00:00<00:00, 12.98it/s]" | |
| ] | |
| }, | |
| { | |
| "name": "stdout", | |
| "output_type": "stream", | |
| "text": [ | |
| "pangeo_forge_esgf.recipe_inputs - WARNING - Was not able to construct url list for (4/9) iids\n", | |
| "pangeo_forge_esgf.recipe_inputs - INFO - Was not able to construct url list for the following iids:\n", | |
| "pangeo_forge_esgf.recipe_inputs - INFO - {'CMIP6.CMIP.MRI.MRI-ESM2-0.historical.r5i1p1f1.day.pr.gn.v20190603', 'CMIP6.CMIP.MRI.MRI-ESM2-0.historical.r3i1p1f1.day.pr.gn.v20190603', 'CMIP6.CMIP.MRI.MRI-ESM2-0.historical.r2i1p1f1.day.pr.gn.v20190603', 'CMIP6.CMIP.MRI.MRI-ESM2-0.historical.r4i1p1f1.day.pr.gn.v20190603'}\n" | |
| ] | |
| }, | |
| { | |
| "name": "stderr", | |
| "output_type": "stream", | |
| "text": [ | |
| "\n" | |
| ] | |
| } | |
| ], | |
| "source": [ | |
| "# query pangeo-forge-esgf for the urls\n", | |
| "# TODO: I need to write the order of urls into the attrs\n", | |
| "import logging\n", | |
| "import pangeo_forge_esgf\n", | |
| "from pangeo_forge_esgf import get_urls_from_esgf, setup_logging\n", | |
| "\n", | |
| "# setup_logging('DEBUG')\n", | |
| "setup_logging('INFO')\n", | |
| "\n", | |
| "url_dict = await get_urls_from_esgf(iids, limit_per_host=50, max_concurrency=50, choose_url='first_responsive')" | |
| ] | |
| }, | |
| { | |
| "cell_type": "code", | |
| "execution_count": 5, | |
| "id": "8f290281-ba3a-45cf-b436-112170ec3439", | |
| "metadata": {}, | |
| "outputs": [ | |
| { | |
| "data": { | |
| "text/plain": [ | |
| "{'CMIP6.ScenarioMIP.CSIRO-ARCCSS.ACCESS-CM2.ssp585.r1i1p1f1.day.pr.gn.v20210317': ['https://esgf-data1.llnl.gov/thredds/fileServer/css03_data/CMIP6/ScenarioMIP/CSIRO-ARCCSS/ACCESS-CM2/ssp585/r1i1p1f1/day/pr/gn/v20210317/pr_day_ACCESS-CM2_ssp585_r1i1p1f1_gn_22510101-23001231.nc'],\n", | |
| " 'CMIP6.ScenarioMIP.CSIRO.ACCESS-ESM1-5.ssp585.r4i1p1f1.day.sfcWind.gn.v20210318': ['https://esgf-data1.llnl.gov/thredds/fileServer/css03_data/CMIP6/ScenarioMIP/CSIRO/ACCESS-ESM1-5/ssp585/r4i1p1f1/day/sfcWind/gn/v20210318/sfcWind_day_ACCESS-ESM1-5_ssp585_r4i1p1f1_gn_22510101-23001231.nc'],\n", | |
| " 'CMIP6.ScenarioMIP.CSIRO.ACCESS-ESM1-5.ssp585.r6i1p1f1.day.sfcWind.gn.v20210318': ['https://esgf-data1.llnl.gov/thredds/fileServer/css03_data/CMIP6/ScenarioMIP/CSIRO/ACCESS-ESM1-5/ssp585/r6i1p1f1/day/sfcWind/gn/v20210318/sfcWind_day_ACCESS-ESM1-5_ssp585_r6i1p1f1_gn_22010101-22501231.nc',\n", | |
| " 'https://esgf-data1.llnl.gov/thredds/fileServer/css03_data/CMIP6/ScenarioMIP/CSIRO/ACCESS-ESM1-5/ssp585/r6i1p1f1/day/sfcWind/gn/v20210318/sfcWind_day_ACCESS-ESM1-5_ssp585_r6i1p1f1_gn_22510101-23001231.nc'],\n", | |
| " 'CMIP6.ScenarioMIP.CSIRO.ACCESS-ESM1-5.ssp585.r4i1p1f1.day.pr.gn.v20210318': ['https://esgf-data1.llnl.gov/thredds/fileServer/css03_data/CMIP6/ScenarioMIP/CSIRO/ACCESS-ESM1-5/ssp585/r4i1p1f1/day/pr/gn/v20210318/pr_day_ACCESS-ESM1-5_ssp585_r4i1p1f1_gn_22010101-22501231.nc',\n", | |
| " 'https://esgf-data1.llnl.gov/thredds/fileServer/css03_data/CMIP6/ScenarioMIP/CSIRO/ACCESS-ESM1-5/ssp585/r4i1p1f1/day/pr/gn/v20210318/pr_day_ACCESS-ESM1-5_ssp585_r4i1p1f1_gn_22510101-23001231.nc'],\n", | |
| " 'CMIP6.ScenarioMIP.CSIRO.ACCESS-ESM1-5.ssp585.r10i1p1f1.day.pr.gn.v20210318': ['https://esgf-data1.llnl.gov/thredds/fileServer/css03_data/CMIP6/ScenarioMIP/CSIRO/ACCESS-ESM1-5/ssp585/r10i1p1f1/day/pr/gn/v20210318/pr_day_ACCESS-ESM1-5_ssp585_r10i1p1f1_gn_22010101-22501231.nc',\n", | |
| " 'https://esgf-data1.llnl.gov/thredds/fileServer/css03_data/CMIP6/ScenarioMIP/CSIRO/ACCESS-ESM1-5/ssp585/r10i1p1f1/day/pr/gn/v20210318/pr_day_ACCESS-ESM1-5_ssp585_r10i1p1f1_gn_22510101-23001231.nc']}" | |
| ] | |
| }, | |
| "execution_count": 5, | |
| "metadata": {}, | |
| "output_type": "execute_result" | |
| } | |
| ], | |
| "source": [ | |
| "url_dict" | |
| ] | |
| }, | |
| { | |
| "cell_type": "code", | |
| "execution_count": null, | |
| "id": "6c7f4e29-cbed-4ebd-9e49-9e2e3b76d8e1", | |
| "metadata": {}, | |
| "outputs": [], | |
| "source": [] | |
| } | |
| ], | |
| "metadata": { | |
| "kernelspec": { | |
| "display_name": "Python 3 (ipykernel)", | |
| "language": "python", | |
| "name": "python3" | |
| }, | |
| "language_info": { | |
| "codemirror_mode": { | |
| "name": "ipython", | |
| "version": 3 | |
| }, | |
| "file_extension": ".py", | |
| "mimetype": "text/x-python", | |
| "name": "python", | |
| "nbconvert_exporter": "python", | |
| "pygments_lexer": "ipython3", | |
| "version": "3.10.12" | |
| } | |
| }, | |
| "nbformat": 4, | |
| "nbformat_minor": 5 | |
| } |
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