jcausey-astate

TODO: TITLE HERE

Name:

Read questions carefully and answer all parts as completely as possible. Vague, off-subject, or illegible answers will not earn credit.

1. TODO: Question 1

jcausey-astate

/**
 * @file easy_rand.h
 * 
 * Makes it easy to generate good pseudo-random values in a
 * given numerical range using the new C++11 <random> features,
 * without the setup overhead.
 */
#ifndef EASY_RAND_H
#define EASY_RAND_H

jcausey-astate

#! /usr/bin/env python
###################################################################################################
# Given a CSV or tab-delimited input file (ASCII-encoding), replace all
# missing values or all occurances of a specified value with a new marker.
# Useful for large scientific data where some values are missing (i.e. gene
# microarrays, etc)
# 
# The MIT License (MIT)
#
# Copyright (c) 2016 Jason L Causey, Arkansas State University

jcausey-astate

Keybase proof

I hereby claim:

• I am jcausey-astate on github.
• I am jcausey_astate (https://keybase.io/jcausey_astate) on keybase.
• I have a public key ASA4rcY4g2eyBqkPVFpLAKkmMKe8a26ZQwt_EJmB0qZMZgo

To claim this, I am signing this object:

jcausey-astate

#!/usr/bin/env bash
####################################################################
# Removes any files that are not currently in the working tree from
# the git repository history.
####################################################################

KEEPFILES=$(mktemp)
FULLLIST=$(mktemp)
REMOVEFILES=$(mktemp)

jcausey-astate

#!/bin/bash
script="$(basename ${0})"
read -r -d '' USAGE <<-EOF

Watches a specified process (by pid or name) and runs
a specified command after it exits.
If watching by name, the command executes when no process 
by that name is running.

Usage:

jcausey-astate

/**
* EXAMPLE FROM: https://iamtrask.github.io/2015/07/12/basic-python-network/
*  I'm replicating the "3 Layer Neural Network" code using C++ and Eigen below.
*  This network is trying to learn to recognize an XOR in the first two elements
*  of a 3-value vector, the third value doesn't matter.
*/

#include <iostream>
#include <fstream>
#include <ctime>

jcausey-astate

Data Analysis Tools You (may) Already Have

This example will use the text of Grimms' Fairy Tales available from Project Gutenberg.

grep - Search in text!

The grep tool is installed by default on most Linux and UNIX-like systems.

Documentation is available at:

jcausey-astate

jcausey-astate

"""
Encodes SNP format (TSV) into a numeric matrix (CSV) format.
See docstring in `main()` for more info, or run with --help.
"""
import click
import sys, os, csv, json


@click.command()
@click.argument("input_file", type=click.File("r"))