jcreinhold

#/usr/bin/env python
# convert all nifti files in a directory to float32

import argparse
from glob import glob
import os
import sys

import nibabel as nib

jcreinhold

#!/usr/bin/env python
# prune files from a directory that are different dimensions than the mode

import argparse
from collections import Counter
from glob import glob
import os
import shutil
import sys

jcreinhold

jcreinhold

jcreinhold

jcreinhold

jcreinhold

#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
rpca_cpu

implementations of RPCA on the CPU for low-rank and sparse
matrix decomposition as well as a nuclear-norm
minimization routine via singular value thresholding
for matrix completion

jcreinhold

#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
rpca_gpu

implementations of RPCA on the GPU (leveraging pytorch) 
for low-rank and sparse matrix decomposition as well as 
a nuclear-norm minimization routine via singular value 
thresholding for matrix completion

jcreinhold

jcreinhold

#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
nii_to_tif

command line executable to convert 3d nifti images to 
individual tiff images along a user-specified axis

call as: python nii_to_tif.py /path/to/nifti /path/to/tif
(append optional arguments to the call as desired)