jeetsukumaran

#!/usr/bin/env python
# -*- coding: utf-8 -*-

import re
import os
import pathlib
import sys
import argparse
import codecs

jeetsukumaran

#!/usr/bin/env python
# -*- coding: utf-8 -*-

import os
import pathlib
import sys
import argparse
import subprocess

"""

jeetsukumaran

#! /bin/bash
# Fix your Git repo branch names.
# Free to use (at your own risk), and share/modify, as long 
# as you are not a racist or a tedious "2-sides" bore.
set -x
set -e -o pipefail
git branch -m master main
git push
git push origin :master
git push --set-upstream origin main

jeetsukumaran

#! /usr/bin/env python3

################################################################################
# Copyright 2020 Jeet Sukumaran
#
# Permission is hereby granted, free of charge, to any person obtaining a copy
# of this software and associated documentation files (the "Software"), to deal
# in the Software without restriction, including without limitation the rights
# to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
# copies of the Software, and to permit persons to whom the Software is

jeetsukumaran

# Minimal makefile for Sphinx documentation
# Project organization assumed:
# 
# project1/
#         docs/
#         src/
#             project1/
#             project1-docs/
#                           build/
#                           source/

jeetsukumaran

setup(
    name="tecolotl",
    version="1.0",
    author="Tlacalel",
    author_email="tlacalel@tenochtitlan.anhuac",
    packages=find_packages("src"),
    package_dir={"": "src"},
    scripts=[
        "bin/tecolotl-check",
        "bin/tecolotl-estimate",

jeetsukumaran

#! /usr/bin/env python
# -*- coding: utf-8 -*-

class A(object):
    def __init__(self):
        self._foo = None

    def foo():
        doc = "The foo property."
        def fget(self):

jeetsukumaran

Begin data;
	Dimensions NTAX=4 NCHAR=1;
	Format MISSING=? GAP=- DATATYPE=DNA;
	Matrix
S1 G
S2 C
S3 A
S4 T
	;
END;

jeetsukumaran

#!/usr/bin/env bash
#
# bu: Backup data to repository.
#
# Type 'bu --help' for help on actions and options.
#
# Configuration of 'bu' is done via environmental variables which can be set by user
# in a particular session or saved to a file and read by 'bu'.
#
# Examples of backup configuration files:

jeetsukumaran

#! /bin/sh

# Just a little bit of a dependency dance here:

cd ~/src
wget --no-check-certificate https://zlib.net/zlib-1.2.11.tar.gz
tar xf zlib-1.2.11.tar.gz
cd zlib-1.2.11.tar.gz
configure --prefix=$HOME/Environment/local
make && make install