jergosh

JOB_DEP_CMD = echo $(DATASETS) | sed 's/ /"\) \&\& done("/g'
JOB_DEP = -w 'done("$(shell $(JOB_DEP_CMD))")'

@$(foreach DS,$(DATASETS), $(SUBMIT_JOB) -J $(DS) "samtools view -b -h $(ALN_DIR)/$(DS)/$(SPIKEIN_NVTR) $(SPIKEIN_NAMES) -o $(ALN_DIR)/$(DS)/spikeins.bam";)

jergosh

#!/usr/bin/perl

use strict;
use Bio::SeqIO;
use Bio::EnsEMBL::Registry;

Bio::EnsEMBL::Registry->load_registry_from_db(
    -host => 'ensembldb.ensembl.org',
    -user => 'anonymous'
    );