jgeiger

#
# /etc/sysctl.conf - Configuration file for setting system variables
# See /etc/sysctl.d/ for additional system variables.
# See sysctl.conf (5) for information.
#

#kernel.domainname = example.com

# Uncomment the following to stop low-level messages on console
#kernel.printk = 3 4 1 3

jgeiger

###############################################################################
## Monit control file
###############################################################################
##
## Start Monit in the background (run as a daemon):

set daemon  60              # check services at 1-minute intervals

set logfile syslog facility log_daemon

jgeiger

description "Monit service manager"

limit core unlimited unlimited

start on runlevel [2345]
stop on runlevel [!2345]

expect daemon
respawn

jgeiger

description "Redis Server"
author "Thomas Woolford <thomas@urpages.com.au>"

# run when the local FS becomes available
start on local-filesystems
stop on shutdown

# The default redis conf has `daemonize = yes` and will naiively fork itself.
expect fork

jgeiger

# Redis configuration file example

# Note on units: when memory size is needed, it is possible to specify
# it in the usual form of 1k 5GB 4M and so forth:
#
# 1k => 1000 bytes
# 1kb => 1024 bytes
# 1m => 1000000 bytes
# 1mb => 1024*1024 bytes
# 1g => 1000000000 bytes

jgeiger

#!/bin/sh
#
# redis - this script starts and stops the redis-server daemon
#
# chkconfig:   - 85 15 
# description:  Redis is a persistent key-value database
# processname: redis-server
# config:      /etc/redis/redis.conf
# config:      /etc/sysconfig/redis
# pidfile:     /var/run/redis.pid

jgeiger

#!/bin/bash
# from here: http://www.codingsteps.com/install-redis-2-6-on-amazon-ec2-linux-ami-or-centos/
# and here: https://raw.github.com/gist/257849/9f1e627e0b7dbe68882fa2b7bdb1b2b263522004/redis-server
###############################################
# To use: 
# wget https://gist.githubusercontent.com/dfetterman/cf7bc4aa53c47fb546c6/raw/e11cd22f41e6cab71fe621b1f5a1377ff3af01ab/install-redis.sh
# chmod 777 install-redis.sh
# ./install-redis.sh
###############################################
echo "*****************************************"

jgeiger

def find_for_curation(conditions, user_id)
  RedisConnection.db.sadd('curators', user_id)
  RedisConnection.db.del("curator-#{user_id}")
  curator_ids = RedisConnection.db.smembers('curators')
  curator_keys = curator_ids.map { |id| "curator-#{id}" }
  active_annotation_ids = RedisConnection.db.sunion(*curator_keys)
  annotations = Annotation.where(conditions).where("annotations.id NOT IN (#{active_annotation_ids.to_in_query_string})").joins(:ontology_term).joins(:ontology).limit(15).order('ontology_terms.name')
  annotations.each do |annotation|
    RedisConnection.db.sadd("curator-#{user_id}", annotation.id)
  end

jgeiger

# create a new cron job at panel.dreamhost.com and run it daily (which will be midnight)
/home/account/opt/bin/logrotate -f -s /home/account/opt/lib/logrotate.status /home/account/opt/etc/logrotate.conf

jgeiger

export PATH=$HOME/.gems/bin:$HOME/opt/bin:$PATH
export GEM_HOME=$HOME/.gems
export GEM_PATH="$GEM_HOME" 
export RUBYLIB="$HOME/opt/lib:$RUBYLIB"

alias gem="nice -n19 ~/opt/bin/gem"