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Jody Klymak jklymak

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jklymak / renamexarray.py
Created July 15, 2016 20:28
dlat = dlat.rename({'latb':'lat'})
dlat['lat'].data = data['lat'].data
@jklymak
jklymak / writeable_mds_store.py
Last active January 30, 2017 21:45 — forked from rabernat/writeable_mds_store.py
writable MDS store for dask
class writable_mds_store:
'''
This will write each chunk to a binary file. Really only works if chunks are the k-index of the matrix
'''
def __init__(self, prefix, itern, suffix='data', dtype='>f4'):
self.prefix = prefix
self.itern = itern
self.suffix = suffix
self.dtype = dtype
self.fname = '%s.%010d.%s' % (self.prefix, self.itern, self.suffix)
@jklymak
jklymak / Untitled.ipynb
Created February 6, 2017 05:18 — forked from rabernat/Untitled.ipynb
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@jklymak
jklymak / gendata_justregrid.py
Created February 9, 2017 23:59
Regridding of coarse to fine w/ dask. Example of using dask.map_blocks and of writing dask files as mds stores.
coarsename = '/scr/jklymak/LeeCoarse/coarse3d%s01U10/_Model/input/'%runtype
print(coarsename)
def interpolateAtDepth(X,T,x0,y0,x,y,defaultval,block_id=None):
import scipy.interpolate
good = np.where(T[0,0,:,:]>20.)
bad = np.where(T[0,0,:,:]<=20.)
Tt = X.copy()[0,0,:,:]
print(Tt)
#print(good)
@jklymak
jklymak / cleanup.py
Created March 1, 2017 17:34
Cleanup mitgcm data on server
import os
import glob
TODO = 'LWRegrid2full01U10'
Root = '../results/'+TODO+'/_Model/input/'
print(Root)
dd = glob.glob(Root+'S.*')
print(dd)
@jklymak
jklymak / bookmarks.txt
Last active July 15, 2018 14:45
Merge pdfs with bookmarks!
0 "Cover Page" 1 open
0 "Nomination Letter" 2
0 "Referee Letters" 3
1 "Writer 1" 3
1 "Writer 2" 5
0 "CV" 7
1 "Education and Training" 7
1 "Degrees" 7
1 "Postdoctoral experience" 7
1 "Academic positions" 7
@jklymak
jklymak / ExampleLegend.ipynb
Last active March 7, 2017 17:12
matplotlib: Make legend labels be aligned for a table...
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@jklymak
jklymak / parsegrades.py
Created April 18, 2017 17:35
Parse a UVic grade sheet. Obviously a lot is hardcoded
import pandas
df = pandas.read_excel('ClassListGradeEntry_07-02-2017_11-15-08_AM.xls')
for ii in range(6):
for col in range(len(df.loc[ii])-2):
if (col in [11,15]):
print('--------------------------------------------------------------')
if col in [0,1,16]:
print('%20s: %20s'%(df.keys()[col],df.loc[ii][col]))
@jklymak
jklymak / runModel.py
Created May 21, 2017 19:12
python pbs script. This is just an outline. It works fine, so maybe a nice way to do PBS scripts.
#!/u/home/jklymak/miniconda2/bin/python
#PBS -m be
#PBS -M jklymak@gmail.com
#PBS -l select=1:ncpus=1
#PBS -l walltime=00:00:10
#PBS -q transfer
#PBS -A XXXXXXXXXXX
#PBS -j oe
#PBS -N Test
@jklymak
jklymak / PressureMITgcm.ipynb
Created May 26, 2017 22:09
Pressure in the MITgcm
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