Joe Futrelle joefutrelle
joefutrelle
/ multiproc.ipynb
Created
August 4, 2016 20:09
Multiprocessing with progress bar in iPython notebook Jupyter
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
joefutrelle
/ fetch_scores_mat.py
Created
August 4, 2016 17:01
fetch IFCB class scores from new mat endpoint
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| import requests | |
| import pandas as pd | |
| from scipy.io import loadmat | |
| mat_url = 'http://ifcb-data.whoi.edu/mvco/IFCB1_2015_117_202220_class_scores.mat' | |
| from tempfile import TemporaryFile | |
| with TemporaryFile() as f: |
joefutrelle
/ MVCO ocean data.ipynb
Created
August 3, 2016 20:00
reading MVCO data endpoint and applying timestamp conversion
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| from StringIO import StringIO | |
| from numpy.core.defchararray import rjust, replace | |
| bin_lid = 'foobar' | |
| prefix = bin_lid + '_' | |
| cols = scores['class2useTB'][:-1] # exclude last class: 'unclassified' | |
| df = pd.DataFrame(scores['TBscores'], columns=cols) | |
| p = scores['roinum'].astype(str) | |
| p = replace(rjust(p,6,'0'),'0',prefix,1) | |
| pid = pd.Series(p) |
joefutrelle
/ progress bar.py
Last active
August 5, 2016 16:24
ipython html / javascript progress bar
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # machinery for a progress bar | |
| import uuid | |
| import time | |
| from IPython.display import HTML, Javascript, display | |
| PB_TEMPLATE = """ | |
| <div style="border: 1px solid black; width:500px"> | |
| <div id="%s" style="background-color:%s; width:0%%"> </div> | |
| </div> | |
| """ |
joefutrelle
/ Hausdorff KDTree.ipynb
Last active
June 15, 2023 23:54
Hausdorff and Modified Hausdorff distance implemented using KDTree
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| import tempfile | |
| from IPython.core import display | |
| from matplotlib import pyplot as plt | |
| from skimage.io import imread, imsave | |
| from skimage import img_as_float, img_as_ubyte | |
| def _show_arr(arr): | |
| with tempfile.NamedTemporaryFile(suffix='.png') as tf: |
joefutrelle
/ unsharp mask.ipynb
Created
April 4, 2016 16:01
Contrast enhancement using unsharp mask
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.