johngrimes

import requests


def get_oauth2_token(client_id, client_secret, token_url):
    """
    Obtain an OAuth2 token using client credentials grant.

    :param client_id: OAuth2 Client ID
    :param client_secret: OAuth2 Client Secret
    :param token_url: OAuth2 Token Endpoint URL

johngrimes

johngrimes

Dependencies

• jq
• Pathling Python library

Step 1

bash get-codings.sh fhir/*.json >codings.ndjson

johngrimes

server {
  listen 80;
  root /usr/share/nginx/html;
  gzip on;
  gzip_types text/css application/javascript application/json image/svg+xml;
  gzip_comp_level 9;
  etag on;
  location / {
    try_files $uri $uri/ /index.html;
  }

johngrimes

FROM nginx

COPY docker/start.sh /
COPY docker/buildConfig.sh /
RUN chmod +x /start.sh /buildConfig.sh

COPY docker/myapp.nginx.conf /etc/nginx/conf.d/default.conf
COPY build /usr/share/nginx/html

ENV MYAPP_OPTION_A="Default option A value"

johngrimes

import json
import multiprocessing as mp
import sys
from math import floor
from time import time

import requests


def update_resource(file):

johngrimes

import multiprocessing as mp
import sys
from time import time

import requests


def upload_bundle(file):
    with open(file) as bundle:
        data = bundle.read()

johngrimes

import json
import sys

input_bundle = json.load(sys.stdin)

output_bundle = {
    "resourceType": "Bundle",
    "type": "transaction",
    "entry": [
        {

johngrimes

johngrimes

/* Adapted from Tom Cunningham's 'Data Warehousing with MySql' (www.meansandends.com/mysql-data-warehouse) */

###### small-numbers table
DROP TABLE IF EXISTS numbers_small;
CREATE TABLE numbers_small (number INT);
INSERT INTO numbers_small VALUES (0),(1),(2),(3),(4),(5),(6),(7),(8),(9);

###### main numbers table
DROP TABLE IF EXISTS numbers;
CREATE TABLE numbers (number BIGINT);