See http://www.openmicroscopy.org/site/support/omero5/sysadmins/unix/server-install-homebrew.html for instructions on how to install OMERO via Homebrew
Josh Moore joshmoore
joshmoore
/ pytables_ci.py
Created
August 26, 2011 22:19
PyTables script to be run during continuous integration (cross-platform)
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| import os | |
| import re | |
| import sys | |
| import subprocess | |
| import platform | |
| venv = os.environ.get("VIRTUALENV", "default") | |
| if platform.system() == "Windows": | |
| home = "C:\\hudson" |
joshmoore
/ install_hdf5.sh
Created
September 14, 2011 12:31
Simple *nix install script for HDF5 (1.8.7)
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| set -e | |
| set -u | |
| BASE=hdf5-1.8.7 | |
| CURRENT=`pwd` | |
| TARGET=$1 | |
| if (test -e $TARGET/bin/h5ls && $TARGET/bin/h5ls --version) | |
| then | |
| echo Using existing HDF install in $TARGET |
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| -----BEGIN PGP PUBLIC KEY BLOCK----- | |
| Version: GnuPG/MacGPG2 v2.0.17 (Darwin) | |
| Comment: GPGTools - http://gpgtools.org | |
| mQGiBEVFESIRBACvlOZBZDE69SR5OqCKjA8Z+pdVl4NxVmzo7uWoMROfv8T4DOdY | |
| mk+Gn642T+5kcK/FI7q3L3Amx7Spn5Xb4nKZsfoppRGXT9oF1DpGIERsJAxfk2a4 | |
| ykISw8RiZWMzXUImORg9+IZvIhYPGl44M5iNbzOk0I0g8WS7T47N78LCAwCgl9y7 | |
| hjYbExQQ6TsPrCvFlvYsgg8EAKkTaqzpXN1PDep3/W8Kmjk9XGTXYN7NXK14R5mm | |
| xPlYhfCu5nkjsr7kkERdpu8xhmEvp0DIQRK0CwI4hwlN4/iDfttWS2LQkTxg45/Z | |
| tX10Ks9Mk/dIdUqaoVYnZR5wTUcaT2GJYu7EhPNHyAiGNmGXIAhNucrNsNF+o2QO |
joshmoore
/ ice_switch.sh
Created
November 25, 2011 09:42
Switch between zeroc-ice33 and zeroc-ice34 formulae
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| # See Formula in https://github.com/joshmoore/homebrew/tree/omero-only | |
| # | |
| # Use: git remote add omero git@github.com:joshmoore/homebrew.git | |
| # git fetch omero | |
| # git merge omero/omero-only | |
| # | |
| ice33() { | |
| VERSION=`slice2java --version 2>&1` | |
| if [[ "$VERSION" != "3.3.1" ]]; | |
| then |
joshmoore
/ patch.mcpp.2.7.2
Created
February 24, 2012 08:02
MCCP Patch from http://www.zeroc.com/download/Ice/3.4/ThirdParty-Sources-3.4.1.tar.gz
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| diff -c -r -N ../mcpp-2.7.2/src/internal.H ./src/internal.H | |
| *** ../mcpp-2.7.2/src/internal.H 2008-08-27 10:31:16.000000000 -0230 | |
| --- ./src/internal.H 2009-12-17 21:01:35.000000000 -0330 | |
| *************** | |
| *** 390,395 **** | |
| --- 390,397 ---- | |
| extern char identifier[]; /* Lastly scanned name */ | |
| extern IFINFO ifstack[]; /* Information of #if nesting */ | |
| extern char work_buf[]; | |
| + extern FILEINFO * sh_file; |
Example build directory.
See: http://lists.openmicroscopy.org.uk/pipermail/ome-users/2012-March/002964.html
$ git clone git://gist.github.com/2158254.git components/hyldap
Cloning into 'components/hyldap'...
remote: Counting objects: 19, done.
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| import tables | |
| import random | |
| class Descr(tables.IsDescription): | |
| Awhen = tables.Time32Col(pos = 1) | |
| value = tables.Float32Col(pos = 2) | |
| h5f = tables.openFile('alan.h5', 'w') | |
| tbl = h5f.createTable('/', 'test', Descr) |
joshmoore
/ simpler_importer.java
Created
July 2, 2012 23:02
Java example of how to write a very basic OMERO importer (see https://www.openmicroscopy.org/community/viewtopic.php?f=6&t=1062)
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| import ome.formats.OMEROMetadataStoreClient; | |
| import ome.formats.importer.IObservable; | |
| import ome.formats.importer.IObserver; | |
| import ome.formats.importer.ImportCandidates; | |
| import ome.formats.importer.ImportConfig; | |
| import ome.formats.importer.ImportContainer; | |
| import ome.formats.importer.ImportEvent; | |
| import static ome.formats.importer.ImportEvent.IMPORT_DONE; | |
| import ome.formats.importer.ImportLibrary; | |
| import ome.formats.importer.OMEROWrapper; |
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| """ | |
| This gist is being merged into the OME mainline. Please see: | |
| https://github.com/snoopycrimecop/snoopycrimecop/blob/master | |
| """ |
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