jsun

import sys
import os


## Description:
##   This script is used for converting the coordinates in GTF file
##   with the VCF file.
##
## Usage:
##   python convert_gtf.py sampl.vcf sampl.gtf > modified_sampl.gtf

jsun

import sys
import re

## Description:
##   Calculation of non-overlapping exon length with GFF file for each gene.
## 
##   e.g) Gene G has four transcripts: Ga, Gb, Gc, and Gd. The four transcripts
##        have different numbers of exons and different combinations of exons.
##        Some regions are shared with the four transcripts, and some regions
##        are only used by a single transcript. These information are saved in