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justincbagley / How_To_Install_&_Run_dadi-mod.md
Last active May 3, 2017 17:18
How to Install and Run Modified ```∂a∂i``` v1.6.3 from Tine *et al.* (2014)

How To Install and Run Modified ∂a∂i v1.6.3 from Tine et al. (2014)

This file describes how I installed Tine et al.'s modified version of ∂a∂i software on the BYU FSL supercomputing cluster marylou, and got it working, on April 15, 2017. Tine et al.'s modification of ∂a∂i permits models of heterogeneous migration between lineages, consistent with introgression of specific regions of the genome.

STEP #1. Download ∂a∂i mod distribution.

Tine et al.'s modification of ∂a∂i v1.6.3 is distributed in a "dadi-1.6.3_modif" folder containing the distro, which is available as part of a blog post at this SEA Lab website. Go to the bottom of the blog post and then download the modified ∂a∂i archive from this link.

STEP #2. Python virtual environment setup on supercomputer.