jwaageSnippets
jwaageSnippets
/ GTF2TranscriptDB.R
Created
February 5, 2013 15:24
— forked from DarioS/GTF2TranscriptDB.R
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| GTF2TranscriptDB <- function(gtf.file, out.file = NULL, verbose = TRUE) | |
| { | |
| require(rtracklayer) | |
| require(GenomicRanges) | |
| require(GenomicFeatures) | |
| min.info <- c("gene_id", "transcript_id", "exon_number") | |
| if (verbose) message("Importing ", gtf.file) | |
| gtf <- import.gff(gtf.file, asRangedData = FALSE) |