| #GATK Method <- Slower and keeps original ID plut dbSNP rsID | |
| # R=Reference FASTA | |
| # V=VCF file to add IDs to | |
| # --dbsnp = dbsnp VCF -- download from NCBI FTP | |
| java -jar GenomeAnalysisTK.jar -R /reference/Homo_sapiens_assembly19.fasta -T VariantAnnotator -V vcf_to_add_id_to.vcf --dbsnp /reference/dbsnp_137.b37.vcf.gz --out /data/Broad.chr1.annotated.vcf | |
| #bcftools Method <- Faster, replaces existing ID with dbSNP rsID | |
| /usr/bin/htslib/bcftools/bcftools annotate -a /reference/dbsnp_137.b37.vcf.gz -c ID vcf_to_add_id_to.vcf |
This gist contains out.tex, a tex file that adds a PDF outline ("bookmarks") to the freely available pdf file of the book
The Elements of Statistical Learning (2nd ed), by Trevor Hastie, Robert Tibshirani, and Jerome Friedman
https://web.stanford.edu/~hastie/ElemStatLearn/
The bookmarks allow to navigate the contents of the book while reading it on a screen.
I successfully enabled the metals lsp server to work with sublime text 3
I didn't actually need to write any lsp client, since I'm using the standard LSP Package
My working setup is specific:
