kiendang

#!/bin/bash
#
# auto match window title and tab background color with
# terminal background color for iTerm2
# append to your .bashrc, .zshrc or whatever
# does not really work with High Sierra
# to reset:
# echo -e "\033]6;1;bg;*;default\a"

osascript -e \

kiendang

---
output: html_document
editor_options:
  chunk_output_type: inline
---
Copyright 2018 Google Inc.

Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at

kiendang

env PYTHON_CONFIGURE_OPTS="--enable-shared" pyenv install 3.7.1

kiendang

#!/bin/bash

find ${1:-.} -name '*.zip' | sed 's/.zip//' | xargs -n1 -P $(nproc) -I _ unzip _.zip -d _

kiendang

channels:
  - defaults
  - pytorch
  - fastai
dependencies:
  - pip
  - ipykernel
  - pytorch::pytorch
  - pytorch::torchvision
  - tensorflow-gpu

kiendang

-- Functions TODO:
--  FROM table CROSS JOIN UNNEST(table.column) AS col -> ????  (see icustay-hours)
--  ???(column) -> PERCENTILE_CONT(0.5) WITHIN GROUP (ORDER BY column)    (not sure how to do median in BQ)

-- psql 'dbname=mimiciv user=mimic options=--search_path=public,mimic_core,mimic_hosp,mimic_icu,mimic_derived' -f postgres-functions.sql

DROP FUNCTION IF EXISTS REGEXP_EXTRACT(str TEXT, pattern TEXT);
CREATE OR REPLACE FUNCTION REGEXP_EXTRACT(str TEXT, pattern TEXT) RETURNS TEXT AS $$
BEGIN
RETURN substring(str from pattern);

kiendang

# This file makes tables for the concepts in this subfolder.
# Be sure to run postgres-functions.sql first, as the concepts rely on those function definitions.
# Note that this may take a large amount of time and hard drive space.

# string replacements are necessary for some queries
export REGEX_DATETIME_DIFF="s/DATETIME_DIFF\((.+?),\s?(.+?),\s?(DAY|MINUTE|SECOND|HOUR|YEAR)\)/DATETIME_DIFF(\1, \2, '\3')/g"
export REGEX_SCHEMA='s/`physionet-data.(mimic_derived|mimic_core|mimic_hosp|mimic_icu).(.+?)`/\2/g'
export CONNSTR='mimiciv mimic'

# this is set as the search_path variable for psql