kjhealy

library(lattice)
data <- read.csv("cities.csv",header=TRUE,row.names=1)
quartz()
stripplot(log(data$Population),groups=data$Outcome)

dev.off()

pdf(file="cities.pdf",height=8,width=8)
dotchart(log(data$Population), groups=data$Outcome,xlab="log Population")
dev.off()

kjhealy

;; ESS: Emacs Speaks Statistics
(load "~/elisp/vendor/ess/lisp/ess-site.el") 

;; Use shift-enter to split window & launch R (if not running), execute highlighted
;; region (if R running & area highlighted), or execute current line
;; (and move to next line, skipping comments). Nice. 
;; See http://www.emacswiki.org/emacs/EmacsSpeaksStatistics,
;; FelipeCsaszar. Adapted to spilit vertically instead of
;; horizontally. 

kjhealy

This is BibTeX, Version 0.99c (TeX Live 2009)
The top-level auxiliary file: organizations.aux
The style file: biblatex.bst
I couldn't open database file organizations-blx.bib
---line 4 of file organizations.aux
 : \bibdata{organizations-blx
 :                           ,socbib}
I'm skipping whatever remains of this command
I found no database files---while reading file organizations.aux

kjhealy

;; Via http://blogisticreflections.wordpress.com/2009/10/01/r-object-tooltips-in-ess/
;;
;; ess-R-object-tooltip.el
;; 
;; I have defined a function, ess-R-object-tooltip, that when
;; invoked, will return a tooltip with some information about
;; the object at point.  The information returned is
;; determined by which R function is called.  This is controlled
;; by an alist, called ess-R-object-tooltip-alist.  The default is
;; given below.  The keys are the classes of R object that will

kjhealy

### Following up on
### http://codeandculture.wordpress.com/2010/02/28/more-r-headaches

library(igraph)
library(plyr) # Hadley Wickham FTW, as usual

## ----------------------------------------------------------------------
## NB for file reading and writing below, we're assuming figures/ and
## data/ subdirs exist in the working directory. Change paths as
## appropriate. 

kjhealy

   (require 'org-latex)
    (setq org-export-latex-listings t)
  
    ;; Originally taken from Bruno Tavernier: http://thread.gmane.org/gmane.emacs.orgmode/31150/focus=31432
    ;; but adapted to use latexmk 4.20 or higher.  
    (defun my-auto-tex-cmd ()
      "When exporting from .org with latex, automatically run latex,
       pdflatex, or xelatex as appropriate, using latexmk."
      (let ((texcmd)))
      ;; default command: oldstyle latex via dvi

kjhealy

#+TITLE: My Paper
#+AUTHOR: Jane Doe
#+DATE: January, 2011
#+OPTIONS: toc:nil num:nil
#+LATEX_CMD: xelatex
#+LATEX_HEADER: \setsansfont[Mapping=tex-text, BoldFont={Unit-Bold}, ItalicFont={Unit-Regular}]{Unit-Bold}
#+LATEX_HEADER: \setmonofont[Mapping=tex-text,Scale=MatchLowercase]{PragmataPro} 
#+LATEX_HEADER: \setromanfont[Mapping=tex-text,Numbers=OldStyle]{Charis SIL}

** Introduction

kjhealy

  (require 'org-latex)  
  ;; Choose either listings or minted for exporting source code blocks.
  ;; Using minted (as here) requires pygments be installed. To use the
  ;; default listings package instead, use
  ;; (setq org-export-latex-listings t)
  ;; and change references to "minted" below to "listings"
  (setq org-export-latex-listings 'minted)
  
    ;; Originally taken from Bruno Tavernier: http://thread.gmane.org/gmane.emacs.orgmode/31150/focus=31432
    ;; but adapted to use latexmk 4.22 or higher.  

kjhealy

### Here's one way to do it.

library(igraph)
library(ggplot2)

## The igraph docs say that vertex.label.degree controls the position
## of the labels with respect to the vertices. It's interpreted as a
## radian, like this:
##
## Value is : Label appears ... the node

kjhealy

module Jekyll
  class MathJaxBlockTag < Liquid::Tag
    def render(context)
      '<script type="math/tex; mode=display">'
    end
  end
class MathJaxInlineTag < Liquid::Tag
    def render(context)
      '<script type="math/tex">'
    end