read_ctd.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Try creating profile with pocean core"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "%matplotlib inline\n",
    "import os\n",
    "import ctd\n",
    "import pytz\n",
    "import datetime\n",
    "\n",
    "from pocean.dsg.profile.im import IncompleteMultidimensionalProfile"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "fname='dCTD001.cnv'"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "#kw = dict(compression='gzip')\n",
    "#cast = ctd.DataFrame.from_cnv(fname, **kw)\n",
    "cast = ctd.DataFrame.from_cnv(fname)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "image/png": 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zez9YJ643yz7gcz9gZjvMbGmrZX3NbI6ZrQne9jnIttcG66wxs2uT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\nkTShQhcRSRMqdBGRNKFCFxFJE/8PWXjK6Cn8mssAAAAASUVORK5CYII=\n",
      "text/plain": [
       "<matplotlib.figure.Figure at 0x7f9f6eea1080>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "downcast, upcast = cast.split()\n",
    "fig, ax = downcast['t090C'].plot()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style>\n",
       "    .dataframe thead tr:only-child th {\n",
       "        text-align: right;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: left;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>t090C</th>\n",
       "      <th>t190C</th>\n",
       "      <th>c0S/m</th>\n",
       "      <th>c1S/m</th>\n",
       "      <th>flC</th>\n",
       "      <th>turbWETntu0</th>\n",
       "      <th>sbeox0V</th>\n",
       "      <th>sbeox1V</th>\n",
       "      <th>bat</th>\n",
       "      <th>xmiss</th>\n",
       "      <th>...</th>\n",
       "      <th>sigma-�11</th>\n",
       "      <th>depSM</th>\n",
       "      <th>sbeox0PS</th>\n",
       "      <th>sbeox1PS</th>\n",
       "      <th>sal00</th>\n",
       "      <th>sal11</th>\n",
       "      <th>svCM</th>\n",
       "      <th>svCM1</th>\n",
       "      <th>nbin</th>\n",
       "      <th>flag</th>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>Pressure [dbar]</th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>1.0</th>\n",
       "      <td>10.9243</td>\n",
       "      <td>10.9212</td>\n",
       "      <td>3.927643</td>\n",
       "      <td>3.927602</td>\n",
       "      <td>0.2611</td>\n",
       "      <td>0.1695</td>\n",
       "      <td>2.7249</td>\n",
       "      <td>2.5407</td>\n",
       "      <td>0.9603</td>\n",
       "      <td>78.6563</td>\n",
       "      <td>...</td>\n",
       "      <td>27.0323</td>\n",
       "      <td>0.991</td>\n",
       "      <td>101.383</td>\n",
       "      <td>99.542</td>\n",
       "      <td>35.3086</td>\n",
       "      <td>35.3112</td>\n",
       "      <td>1493.50</td>\n",
       "      <td>1493.49</td>\n",
       "      <td>18.0</td>\n",
       "      <td>False</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2.0</th>\n",
       "      <td>10.9190</td>\n",
       "      <td>10.9145</td>\n",
       "      <td>3.927209</td>\n",
       "      <td>3.926972</td>\n",
       "      <td>0.2428</td>\n",
       "      <td>0.1700</td>\n",
       "      <td>2.7235</td>\n",
       "      <td>2.5663</td>\n",
       "      <td>0.9534</td>\n",
       "      <td>78.7929</td>\n",
       "      <td>...</td>\n",
       "      <td>27.0333</td>\n",
       "      <td>1.981</td>\n",
       "      <td>101.274</td>\n",
       "      <td>101.439</td>\n",
       "      <td>35.3089</td>\n",
       "      <td>35.3108</td>\n",
       "      <td>1493.49</td>\n",
       "      <td>1493.48</td>\n",
       "      <td>62.0</td>\n",
       "      <td>False</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3.0</th>\n",
       "      <td>10.9230</td>\n",
       "      <td>10.9194</td>\n",
       "      <td>3.927644</td>\n",
       "      <td>3.927486</td>\n",
       "      <td>0.2450</td>\n",
       "      <td>0.1870</td>\n",
       "      <td>2.7213</td>\n",
       "      <td>2.5907</td>\n",
       "      <td>0.9533</td>\n",
       "      <td>78.7963</td>\n",
       "      <td>...</td>\n",
       "      <td>27.0324</td>\n",
       "      <td>2.972</td>\n",
       "      <td>101.163</td>\n",
       "      <td>103.158</td>\n",
       "      <td>35.3089</td>\n",
       "      <td>35.3108</td>\n",
       "      <td>1493.53</td>\n",
       "      <td>1493.52</td>\n",
       "      <td>35.0</td>\n",
       "      <td>False</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4.0</th>\n",
       "      <td>10.9223</td>\n",
       "      <td>10.9202</td>\n",
       "      <td>3.927599</td>\n",
       "      <td>3.927602</td>\n",
       "      <td>0.2523</td>\n",
       "      <td>0.1817</td>\n",
       "      <td>2.7205</td>\n",
       "      <td>2.6057</td>\n",
       "      <td>0.9521</td>\n",
       "      <td>78.8193</td>\n",
       "      <td>...</td>\n",
       "      <td>27.0322</td>\n",
       "      <td>3.962</td>\n",
       "      <td>101.131</td>\n",
       "      <td>104.082</td>\n",
       "      <td>35.3087</td>\n",
       "      <td>35.3107</td>\n",
       "      <td>1493.54</td>\n",
       "      <td>1493.53</td>\n",
       "      <td>35.0</td>\n",
       "      <td>False</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>5.0</th>\n",
       "      <td>10.9122</td>\n",
       "      <td>10.9103</td>\n",
       "      <td>3.926742</td>\n",
       "      <td>3.926738</td>\n",
       "      <td>0.2590</td>\n",
       "      <td>0.2068</td>\n",
       "      <td>2.7186</td>\n",
       "      <td>2.6230</td>\n",
       "      <td>0.9514</td>\n",
       "      <td>78.8325</td>\n",
       "      <td>...</td>\n",
       "      <td>27.0344</td>\n",
       "      <td>4.953</td>\n",
       "      <td>100.993</td>\n",
       "      <td>104.786</td>\n",
       "      <td>35.3094</td>\n",
       "      <td>35.3112</td>\n",
       "      <td>1493.52</td>\n",
       "      <td>1493.52</td>\n",
       "      <td>38.0</td>\n",
       "      <td>False</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>5 rows × 23 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "                   t090C    t190C     c0S/m     c1S/m     flC  turbWETntu0  \\\n",
       "Pressure [dbar]                                                              \n",
       "1.0              10.9243  10.9212  3.927643  3.927602  0.2611       0.1695   \n",
       "2.0              10.9190  10.9145  3.927209  3.926972  0.2428       0.1700   \n",
       "3.0              10.9230  10.9194  3.927644  3.927486  0.2450       0.1870   \n",
       "4.0              10.9223  10.9202  3.927599  3.927602  0.2523       0.1817   \n",
       "5.0              10.9122  10.9103  3.926742  3.926738  0.2590       0.2068   \n",
       "\n",
       "                 sbeox0V  sbeox1V     bat    xmiss  ...    sigma-�11  depSM  \\\n",
       "Pressure [dbar]                                     ...                       \n",
       "1.0               2.7249   2.5407  0.9603  78.6563  ...      27.0323  0.991   \n",
       "2.0               2.7235   2.5663  0.9534  78.7929  ...      27.0333  1.981   \n",
       "3.0               2.7213   2.5907  0.9533  78.7963  ...      27.0324  2.972   \n",
       "4.0               2.7205   2.6057  0.9521  78.8193  ...      27.0322  3.962   \n",
       "5.0               2.7186   2.6230  0.9514  78.8325  ...      27.0344  4.953   \n",
       "\n",
       "                 sbeox0PS  sbeox1PS    sal00    sal11     svCM    svCM1  nbin  \\\n",
       "Pressure [dbar]                                                                 \n",
       "1.0               101.383    99.542  35.3086  35.3112  1493.50  1493.49  18.0   \n",
       "2.0               101.274   101.439  35.3089  35.3108  1493.49  1493.48  62.0   \n",
       "3.0               101.163   103.158  35.3089  35.3108  1493.53  1493.52  35.0   \n",
       "4.0               101.131   104.082  35.3087  35.3107  1493.54  1493.53  35.0   \n",
       "5.0               100.993   104.786  35.3094  35.3112  1493.52  1493.52  38.0   \n",
       "\n",
       "                  flag  \n",
       "Pressure [dbar]         \n",
       "1.0              False  \n",
       "2.0              False  \n",
       "3.0              False  \n",
       "4.0              False  \n",
       "5.0              False  \n",
       "\n",
       "[5 rows x 23 columns]"
      ]
     },
     "execution_count": 5,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "cast.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "image/png": 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Xsqelncz0NL58xlhGFOp2cpI8VOjS6z25fDu/fmEdJQNyufC4EcwYVcgJo4t0b1BJOip0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\nKeL/Aw+t1rIlyfytAAAAAElFTkSuQmCC\n",
      "text/plain": [
       "<matplotlib.figure.Figure at 0x7f9f6cd81940>"
      ]
     },
     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "cast['t090C'].plot();"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "['* Sea-Bird SBE 9 Data File:',\n",
       " '* FileName = D:\\\\CRUISE_DATA\\\\NREP17\\\\INSIDE\\\\CTD001.hex',\n",
       " '* Software Version Seasave V 7.21d',\n",
       " '* Temperature SN = 5475',\n",
       " '* Conductivity SN = 3934',\n",
       " '* Number of Bytes Per Scan = 37',\n",
       " '* Number of Voltage Words = 4',\n",
       " '* Number of Scans Averaged by the Deck Unit = 1',\n",
       " '* System UpLoad Time = Jun 01 2017 11:28:16',\n",
       " '* NMEA Latitude = 59 56.56 N',\n",
       " '* NMEA Longitude = 005 08.46 W',\n",
       " '* NMEA UTC (Time) = Jun 01 2017 11:19:12',\n",
       " '* Store Lat/Lon Data = Append to Every Scan',\n",
       " '* SBE 11plus V 5.1g',\n",
       " '* number of scans to average = 1',\n",
       " '* pressure baud rate = 9600',\n",
       " '* NMEA baud rate = 4800',\n",
       " '* GPIB address = 1',\n",
       " '* advance primary conductivity  0.073 seconds',\n",
       " '* advance secondary conductivity  0.073 seconds',\n",
       " '* autorun on power up is disabled',\n",
       " '* S>',\n",
       " '** Ship:   RV-ALLIANCE',\n",
       " '** Cruise: NREP17',\n",
       " '** Station:',\n",
       " '** Depth:',\n",
       " '* System UTC = Jun 01 2017 11:28:16',\n",
       " '*END*']"
      ]
     },
     "execution_count": 7,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "cast.header"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "datetime.datetime(2017, 6, 1, 11, 19, 12)"
      ]
     },
     "execution_count": 8,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "time_header = next(x.split('= ')[1] for x in cast.header if 'NMEA UTC (Time) =' in x)\n",
    "time = datetime.datetime.strptime(time_header,'%b %d %Y %H:%M:%S')\n",
    "time"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "#cast['profile'], _ = cast.station  # Is this a profile identifier?\n",
    "cast['profile'], _ = os.path.splitext(fname)\n",
    "cast['t'] = time\n",
    "cast['x'] = cast.longitude\n",
    "cast['y'] = cast.latitude\n",
    "cast['z'] = cast.index\n",
    "cast['station'] = '001'\n",
    "cast['experiment'] = 'NREP17'\n",
    "cast['flag'] = cast['flag'].astype(int)  # bool columns are not supported in pocean (yet)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style>\n",
       "    .dataframe thead tr:only-child th {\n",
       "        text-align: right;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: left;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>t090C</th>\n",
       "      <th>t190C</th>\n",
       "      <th>c0S/m</th>\n",
       "      <th>c1S/m</th>\n",
       "      <th>flC</th>\n",
       "      <th>turbWETntu0</th>\n",
       "      <th>sbeox0V</th>\n",
       "      <th>sbeox1V</th>\n",
       "      <th>bat</th>\n",
       "      <th>xmiss</th>\n",
       "      <th>...</th>\n",
       "      <th>svCM1</th>\n",
       "      <th>nbin</th>\n",
       "      <th>flag</th>\n",
       "      <th>profile</th>\n",
       "      <th>t</th>\n",
       "      <th>x</th>\n",
       "      <th>y</th>\n",
       "      <th>z</th>\n",
       "      <th>station</th>\n",
       "      <th>experiment</th>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>Pressure [dbar]</th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "      <th></th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>1.0</th>\n",
       "      <td>10.9243</td>\n",
       "      <td>10.9212</td>\n",
       "      <td>3.927643</td>\n",
       "      <td>3.927602</td>\n",
       "      <td>0.2611</td>\n",
       "      <td>0.1695</td>\n",
       "      <td>2.7249</td>\n",
       "      <td>2.5407</td>\n",
       "      <td>0.9603</td>\n",
       "      <td>78.6563</td>\n",
       "      <td>...</td>\n",
       "      <td>1493.49</td>\n",
       "      <td>18.0</td>\n",
       "      <td>0</td>\n",
       "      <td>dCTD001</td>\n",
       "      <td>2017-06-01 11:19:12</td>\n",
       "      <td>-5.141</td>\n",
       "      <td>59.942667</td>\n",
       "      <td>1.0</td>\n",
       "      <td>001</td>\n",
       "      <td>NREP17</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2.0</th>\n",
       "      <td>10.9190</td>\n",
       "      <td>10.9145</td>\n",
       "      <td>3.927209</td>\n",
       "      <td>3.926972</td>\n",
       "      <td>0.2428</td>\n",
       "      <td>0.1700</td>\n",
       "      <td>2.7235</td>\n",
       "      <td>2.5663</td>\n",
       "      <td>0.9534</td>\n",
       "      <td>78.7929</td>\n",
       "      <td>...</td>\n",
       "      <td>1493.48</td>\n",
       "      <td>62.0</td>\n",
       "      <td>0</td>\n",
       "      <td>dCTD001</td>\n",
       "      <td>2017-06-01 11:19:12</td>\n",
       "      <td>-5.141</td>\n",
       "      <td>59.942667</td>\n",
       "      <td>2.0</td>\n",
       "      <td>001</td>\n",
       "      <td>NREP17</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3.0</th>\n",
       "      <td>10.9230</td>\n",
       "      <td>10.9194</td>\n",
       "      <td>3.927644</td>\n",
       "      <td>3.927486</td>\n",
       "      <td>0.2450</td>\n",
       "      <td>0.1870</td>\n",
       "      <td>2.7213</td>\n",
       "      <td>2.5907</td>\n",
       "      <td>0.9533</td>\n",
       "      <td>78.7963</td>\n",
       "      <td>...</td>\n",
       "      <td>1493.52</td>\n",
       "      <td>35.0</td>\n",
       "      <td>0</td>\n",
       "      <td>dCTD001</td>\n",
       "      <td>2017-06-01 11:19:12</td>\n",
       "      <td>-5.141</td>\n",
       "      <td>59.942667</td>\n",
       "      <td>3.0</td>\n",
       "      <td>001</td>\n",
       "      <td>NREP17</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4.0</th>\n",
       "      <td>10.9223</td>\n",
       "      <td>10.9202</td>\n",
       "      <td>3.927599</td>\n",
       "      <td>3.927602</td>\n",
       "      <td>0.2523</td>\n",
       "      <td>0.1817</td>\n",
       "      <td>2.7205</td>\n",
       "      <td>2.6057</td>\n",
       "      <td>0.9521</td>\n",
       "      <td>78.8193</td>\n",
       "      <td>...</td>\n",
       "      <td>1493.53</td>\n",
       "      <td>35.0</td>\n",
       "      <td>0</td>\n",
       "      <td>dCTD001</td>\n",
       "      <td>2017-06-01 11:19:12</td>\n",
       "      <td>-5.141</td>\n",
       "      <td>59.942667</td>\n",
       "      <td>4.0</td>\n",
       "      <td>001</td>\n",
       "      <td>NREP17</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>5.0</th>\n",
       "      <td>10.9122</td>\n",
       "      <td>10.9103</td>\n",
       "      <td>3.926742</td>\n",
       "      <td>3.926738</td>\n",
       "      <td>0.2590</td>\n",
       "      <td>0.2068</td>\n",
       "      <td>2.7186</td>\n",
       "      <td>2.6230</td>\n",
       "      <td>0.9514</td>\n",
       "      <td>78.8325</td>\n",
       "      <td>...</td>\n",
       "      <td>1493.52</td>\n",
       "      <td>38.0</td>\n",
       "      <td>0</td>\n",
       "      <td>dCTD001</td>\n",
       "      <td>2017-06-01 11:19:12</td>\n",
       "      <td>-5.141</td>\n",
       "      <td>59.942667</td>\n",
       "      <td>5.0</td>\n",
       "      <td>001</td>\n",
       "      <td>NREP17</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>5 rows × 30 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "                   t090C    t190C     c0S/m     c1S/m     flC  turbWETntu0  \\\n",
       "Pressure [dbar]                                                              \n",
       "1.0              10.9243  10.9212  3.927643  3.927602  0.2611       0.1695   \n",
       "2.0              10.9190  10.9145  3.927209  3.926972  0.2428       0.1700   \n",
       "3.0              10.9230  10.9194  3.927644  3.927486  0.2450       0.1870   \n",
       "4.0              10.9223  10.9202  3.927599  3.927602  0.2523       0.1817   \n",
       "5.0              10.9122  10.9103  3.926742  3.926738  0.2590       0.2068   \n",
       "\n",
       "                 sbeox0V  sbeox1V     bat    xmiss     ...        svCM1  nbin  \\\n",
       "Pressure [dbar]                                        ...                      \n",
       "1.0               2.7249   2.5407  0.9603  78.6563     ...      1493.49  18.0   \n",
       "2.0               2.7235   2.5663  0.9534  78.7929     ...      1493.48  62.0   \n",
       "3.0               2.7213   2.5907  0.9533  78.7963     ...      1493.52  35.0   \n",
       "4.0               2.7205   2.6057  0.9521  78.8193     ...      1493.53  35.0   \n",
       "5.0               2.7186   2.6230  0.9514  78.8325     ...      1493.52  38.0   \n",
       "\n",
       "                 flag  profile                   t      x          y    z  \\\n",
       "Pressure [dbar]                                                             \n",
       "1.0                 0  dCTD001 2017-06-01 11:19:12 -5.141  59.942667  1.0   \n",
       "2.0                 0  dCTD001 2017-06-01 11:19:12 -5.141  59.942667  2.0   \n",
       "3.0                 0  dCTD001 2017-06-01 11:19:12 -5.141  59.942667  3.0   \n",
       "4.0                 0  dCTD001 2017-06-01 11:19:12 -5.141  59.942667  4.0   \n",
       "5.0                 0  dCTD001 2017-06-01 11:19:12 -5.141  59.942667  5.0   \n",
       "\n",
       "                 station  experiment  \n",
       "Pressure [dbar]                       \n",
       "1.0                  001      NREP17  \n",
       "2.0                  001      NREP17  \n",
       "3.0                  001      NREP17  \n",
       "4.0                  001      NREP17  \n",
       "5.0                  001      NREP17  \n",
       "\n",
       "[5 rows x 30 columns]"
      ]
     },
     "execution_count": 10,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "cast.head()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "atts={\n",
    "    'global': {\n",
    "        'title': 'NREP17 001',\n",
    "        'summary': 'Data from CTD',\n",
    "        'institution': 'CMRE',\n",
    "        'cdm_profile_variables': 'station, experiment',\n",
    "        'subsetVariables': 'station, experiment',\n",
    "        'comments': [ x + \"\\n\" for x in cast.header ]\n",
    "    },\n",
    "    'longitude': {\n",
    "        'units': 'degrees_east',\n",
    "        'standard_name':'longitude'\n",
    "    },\n",
    "    'latitude': {\n",
    "        'units': 'degrees_north',\n",
    "        'standard_name':'latitude'\n",
    "    },\n",
    "    'z': {\n",
    "        'units': 'dbar',  # pressure\n",
    "        'standard_name': 'depth',\n",
    "        'positive':'down'\n",
    "    },\n",
    "    'un': {\n",
    "        'units': 'm/s',\n",
    "        'standard_name':'eastward_sea_water_velocity'\n",
    "    },\n",
    "    'vn': {\n",
    "        'units': 'm/s',\n",
    "        'standard_name':'northward_sea_water_velocity'\n",
    "    },\n",
    "    'profile': {\n",
    "        'cf_role': 'profile_id'\n",
    "    },\n",
    "    'time': {\n",
    "        'units': IncompleteMultidimensionalProfile.default_time_unit,\n",
    "        'standard_name': 'time'\n",
    "    }\n",
    "}"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "imp = IncompleteMultidimensionalProfile.from_dataframe(cast, output='test.nc', attributes=atts)\n",
    "imp.close()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": []
  }
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