kzfm

import openbabel
# Copyright 2009 TJ O'Donnell
class recap:
  # RECAP-Retrosynthetic Combinatorial Analysis Procedure
  # J. Chem. Inf. Comput. Sci. 1998, 38, 511-522
  def __init__(self, mol, minsize=5):
    self.mol = mol;
    # minimum allowed size (atom count) of fragment
    self.minsize = minsize;
    # bonded atom pairs populated by the apply method,

kzfm

;;; ロードパスの追加
(setq load-path (append
                 '("~/.emacs.d"
                   "~/.emacs.d/packages/emacs-jedi"
G                   "~/.emacs.d/packages/json-mode"
                   "~/.emacs.d/auto-install"
                   "~/.emacs.d/conf")
                 load-path))

;;; packages.el

kzfm

from selenium import webdriver
from selenium.webdriver.common.desired_capabilities import DesiredCapabilities
from selenium.webdriver.common.keys import Keys
from selenium.common.exceptions import WebDriverException

driver = webdriver.Chrome("/Users/kzfm/chromedriver")
url = "https://www.release.tdnet.info/index.html"
driver.get(url)
iframe = driver.find_element_by_tag_name("iframe")
driver.switch_to_frame(iframe)

kzfm

from selenium import webdriver
from selenium.webdriver.common.desired_capabilities import DesiredCapabilities
from selenium.webdriver.common.keys import Keys
from selenium.common.exceptions import WebDriverException

dcap = dict(DesiredCapabilities.PHANTOMJS)
dcap["phantomjs.page.settings.userAgent"] = ("Mozilla/4.0 (compatible; MSIE 7.0; Windows NT 6.1; Trident/7.0; SLCC2; .NET CLR 2.0.50727; .NET CLR 3.5.30729; .NET CLR 3.0.30729; Media Center PC 6.0; .NET4.0C; InfoPath.2; .NET4.0E)")

service_args = [
    '--ssl-protocol=tlsv1'

kzfm

#/bin/env python

import requests
import sys
from pyquery import PyQuery as pq


def get_result(acc):
    r = requests.get("http://trace.ddbj.nig.ac.jp/DRASearch/run?acc={}".format(acc))
    d =pq(r.content)

kzfm

set.seed(851982) 
ex.matrix <- matrix(sample(c(-1, 0, 1), 24, replace = TRUE),
                    nrow = 4,
                    ncol = 6)
row.names(ex.matrix) <- c('A', 'B', 'C', 'D')
colnames(ex.matrix) <- c('P1', 'P2', 'P3', 'P4', 'P5', 'P6')

ex.matrix
ex.mult <- ex.matrix %*% t(ex.matrix)
ex.mult

kzfm

library(ggplot2)
library(gridExtra)

### 

set.seed(1)
x <-seq(-10, 10, by=0.01)
y <- 1 - x ^ 2 + rnorm(length(x), 0, 5)
g1 <- ggplot(data.frame(X=x,Y=y), aes(x=X, y=Y))+ geom_point() + geom_smooth(se = FALSE)
g2 <- ggplot(data.frame(X=x,Y=y), aes(x=X, y=Y))+ geom_point() + geom_smooth(method='lm', se=FALSE)

kzfm

gx <- function(x){
x[-2>x | x>2] <-NA
1/2*cos(6*x)+7/2
}

fx <- function(x){
x[x<(-1)] <- NA
x[x>1] <- NA
x^4-x^2+6
}

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setwd("/Users/kzfm/lang/rcode/ML_for_Hackers/01-Introduction/")
ufo <- read.delim("data/ufo/ufo_awesome.tsv", sep="\t", stringsAsFactors=FALSE, header=FALSE, na.strings="")
names(ufo) <- c("DateOccurred", "DateReported", "Location", "ShortDescription", "Duration", "LongDescription")
good.rows <- ifelse(nchar(ufo$DateOccurred) !=8 | nchar(ufo$DateReported) !=8, FALSE, TRUE)
ufo <- ufo[good.rows,]
ufo$DateOccurred <- as.Date(ufo$DateOccurred, format="%Y%m%d")
ufo$DateReported <- as.Date(ufo$DateReported, format="%Y%m%d")
get.location <- function(l) {
  split.location <- tryCatch(strsplit(l,",")[[1]], error= function(e) return(c(NA, NA)))
  clean.location <- gsub("^ ", "", split.location)

kzfm

(autoload 'ghc-init "ghc" nil t)
(add-hook 'haskell-mode-hook '(lambda ()
				(ghc-init)
                                (local-set-key "\C-j" (lambda () (interactive)(insert " -> ")))
                                (local-set-key "\M-j" (lambda () (interactive)(insert " => ")))
                                (local-set-key "\C-l" (lambda ()(interactive)(insert " <- ")))
                                ))

(defadvice inferior-haskell-load-file (after change-focus-after-load)
  "Change focus to GHCi window after C-c C-l command"