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from openmmtools.constants import kB | |
from simtk import unit | |
import numpy as np | |
from tqdm import tqdm | |
from IPython.core.display import display, HTML | |
from IPython.display import SVG | |
from rdkit.Chem.Draw import IPythonConsole | |
import mdtraj as md | |
#from utils import * | |
import nglview |
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import torch | |
import torch.nn as nn | |
from torch.nn import Softplus | |
from torch.utils.data import Dataset, DataLoader | |
import dgl | |
import dgl.function as fn | |
from dgl.batched_graph import sum_nodes | |
from dgl.data.chem.utils import mol_to_complete_graph | |
import numpy as np | |
from collections import defaultdict |
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