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from openmmtools.constants import kB
from simtk import unit
import numpy as np
from tqdm import tqdm
from IPython.core.display import display, HTML
from IPython.display import SVG
from rdkit.Chem.Draw import IPythonConsole
import mdtraj as md
#from utils import *
import nglview
import torch
import torch.nn as nn
from torch.nn import Softplus
from torch.utils.data import Dataset, DataLoader
import dgl
import dgl.function as fn
from dgl.batched_graph import sum_nodes
from dgl.data.chem.utils import mol_to_complete_graph
import numpy as np
from collections import defaultdict
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leelasd / Clustering Methods.ipynb
Created October 27, 2020 22:59 — forked from greglandrum/Clustering Methods.ipynb
Clustering Methods.ipynb
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leelasd / Show_Ph4_Features_in_PyMOL.ipynb
Created October 27, 2020 22:56 — forked from greglandrum/Show_Ph4_Features_in_PyMOL.ipynb
Show_Ph4_Features_in_PyMOL.ipynb
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leelasd / KNIME_from_Jupyter_demo.ipynb
Created October 27, 2020 22:55 — forked from greglandrum/KNIME_from_Jupyter_demo.ipynb
KNIME from Jupyter_demo.ipynb
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leelasd / Taka_ConstrainedEmbedding.ipynb
Created October 27, 2020 22:54 — forked from greglandrum/Taka_ConstrainedEmbedding.ipynb
Taka_ConstrainedEmbedding.ipynb
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leelasd / Schmidtke_ReversingReactions.ipynb
Created October 27, 2020 22:52 — forked from greglandrum/Schmidtke_ReversingReactions.ipynb
Schmidtke_ReversingReactions.ipynb
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leelasd / SAR Tables.ipynb
Created October 27, 2020 22:51 — forked from greglandrum/SAR Tables.ipynb
SAR Tables.ipynb
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