Andrew Lenards lenards
lenards
/ gist:162800
Created
August 5, 2009 16:39
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| <?xml version="1.0" encoding="utf-8"?> | |
| <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" | |
| xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" | |
| xmlns:dcterms="http://purl.org/dc/terms/" | |
| xmlns:tcommon="http://rs.tdwg.org/ontology/voc/Common#" | |
| xmlns:tc="http://rs.tdwg.org/ontology/voc/TaxonConcept#"> | |
| <tc:TaxonConcept rdf:about="taxonomy:101855 "> | |
| <dcterms:title>Lulworthia uniseptata</dcterms:title> | |
| <dcterms:created>1999-08-16</dcterms:created> | |
| <dcterms:modified>2005-01-19</dcterms:modified> |
lenards
/ gist:202485
Created
October 5, 2009 21:19
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| /** | |
| * Test method for {@link org.ipc.iptol.web.RequestHandlerServlet#uploadFile(javax.servlet.http.HttpServletRequest, javax.servlet.http.HttpServletResponse)}. | |
| */ | |
| @Test | |
| public void testUploadFile() { | |
| ServletRunner sr = new ServletRunner(); | |
| File testfile = new File("/Users/sriram/Documents/workspace/iPToLWeb/src/test/resources/test.nex"); | |
| sr.registerServlet( "fileUploadServlet", RequestHandlerServlet.class.getName()); | |
| ServletUnitClient sc = sr.newClient(); | |
| WebRequest request = new PostMethodWebRequest("http://localhost:8080/fileUploadServlet"); |
lenards
/ gist:202486
Created
October 5, 2009 21:20
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| com.meterware.httpunit.IllegalNonFileParameterException: Parameter 'document' is not a file parameter and may not be set to a file value. | |
| at com.meterware.httpunit.WebRequest.setParameter(WebRequest.java:207) | |
| at org.ipc.iptol.web.test.RequestHandlerServletTest.testUploadFile(RequestHandlerServletTest.java:96) | |
| at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) | |
| at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) | |
| at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) | |
| at java.lang.reflect.Method.invoke(Method.java:597) | |
| at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:44) | |
| at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15) | |
| at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:41) |
lenards
/ PostgreSQL8.log
Created
October 16, 2009 01:57
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| FATAL: could not create shared memory segment: Invalid argument | |
| DETAIL: Failed system call was shmget(key=5432001, size=8642560, 03600). | |
| HINT: This error usually means that PostgreSQL's request for a shared memory segment exceeded your kernel's SHMMAX parameter. You can either reduce the request size or reconfigure the kernel with larger SHMMAX. To reduce the request size (currently 8642560 bytes), reduce PostgreSQL's shared_buffers parameter (currently 300) and/or its max_connections parameter (currently 203). | |
| If the request size is already small, it's possible that it is less than your kernel's SHMMIN parameter, in which case raising the request size or reconfiguring SHMMIN is called for. | |
| The PostgreSQL documentation contains more information about shared memory configuration. |
lenards
/ debug-10-15-09.log
Created
October 16, 2009 04:42
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| 10-15@16:59:47 WARN (FactoryBeanRegistrySupport.java:59) - FactoryBean threw exception from getObjectType, despite the contract saying | |
| that it should return null if the type of its object cannot be determined yet | |
| java.lang.NullPointerException | |
| at java.lang.reflect.Proxy.getProxyClass(Proxy.java:330) | |
| at org.iplantc.jlrproxytoolkit.factorybean.JLRProxyFactoryBean.getObjectType(JLRProxyFactoryBean.java:18) | |
| at org.springframework.beans.factory.support.FactoryBeanRegistrySupport.getTypeForFactoryBean(FactoryBeanRegistrySupport.java:55) | |
| at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.getTypeForFactoryBean(AbstractAutowireCapableBeanFac | |
| java.lang.NullPointerException | |
| at java.lang.reflect.Proxy.getProxyClass(Proxy.java:330) | |
| at org.iplantc.jlrproxytoolkit.factorybean.JLRProxyFactoryBean.getObjectType(JLRProxyFactoryBean.java:18) |
lenards
/ phyloviewer_stacktrace
Created
June 28, 2010 15:29
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| 08:27:29.673 [ERROR] [discoveryenvironment] Uncaught exception escaped | |
| java.lang.ArrayIndexOutOfBoundsException: Array index out of range: 59 | |
| at java.util.Vector.set(Vector.java:712) | |
| at org.iplantc.phyloviewer.client.tree.viewer.render.LayoutCladogram.setBoundingBox(LayoutCladogram.java:106) | |
| at org.iplantc.phyloviewer.client.tree.viewer.render.LayoutCladogram._layoutNode(LayoutCladogram.java:68) | |
| at org.iplantc.phyloviewer.client.tree.viewer.render.LayoutCladogram.layout(LayoutCladogram.java:58) | |
| at org.iplantc.phyloviewer.client.tree.viewer.TreeWidget.loadFromJSON(TreeWidget.java:119) | |
| at org.iplantc.de.client.views.panels.TreePanel.onRender(TreePanel.java:39) | |
| at com.extjs.gxt.ui.client.widget.Component.render(Component.java:971) | |
| at com.extjs.gxt.ui.client.widget.Layout.renderComponent(Layout.java:362) |
lenards
/ FileSelector.java
Created
July 12, 2010 16:29
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| package org.iplantc.de.client.views; | |
| import org.iplantc.de.client.ClientAction; | |
| import org.iplantc.de.client.I18N; | |
| import org.iplantc.de.client.models.File; | |
| import org.iplantc.de.client.views.dialogs.FileSelectDialog; | |
| import org.iplantc.de.client.views.dialogs.IPlantDialog.DialogOkClickHandler; | |
| import com.extjs.gxt.ui.client.event.BaseEvent; | |
| import com.extjs.gxt.ui.client.event.ButtonEvent; |
lenards
/ DataBrowserGrid.java
Created
July 12, 2010 16:31
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| package org.iplantc.de.client.views; | |
| import java.util.ArrayList; | |
| import java.util.Arrays; | |
| import java.util.List; | |
| import org.iplantc.de.client.ErrorHandler; | |
| import org.iplantc.de.client.EventBus; | |
| import org.iplantc.de.client.I18N; | |
| import org.iplantc.de.client.events.disk.mgmt.DiskResourceDeletedEvent; |
lenards
/ SimpleMatePanel.java
Created
July 12, 2010 16:32
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| package org.iplantc.de.client.views.panels; | |
| import org.iplantc.de.client.ClientAction; | |
| import org.iplantc.de.client.I18N; | |
| import org.iplantc.de.client.formatters.AddQuotesFormatter; | |
| import org.iplantc.de.client.metadata.property.Property; | |
| import org.iplantc.de.client.models.File; | |
| import org.iplantc.de.client.utils.ComponentValueTable; | |
| import org.iplantc.de.client.utils.ComponentValueTableValidator; | |
| import org.iplantc.de.client.utils.ValidatorHelper; |
lenards
/ ComplexMatePanel.java
Created
July 12, 2010 16:32
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| package org.iplantc.de.client.views.panels; | |
| import org.iplantc.de.client.I18N; | |
| import org.iplantc.de.client.formatters.AddQuotesFormatter; | |
| import org.iplantc.de.client.metadata.property.Property; | |
| import org.iplantc.de.client.utils.ComponentValueTable; | |
| import org.iplantc.de.client.utils.ComponentValueTableValidator; | |
| import org.iplantc.de.client.utils.ValidatorHelper; | |
| import org.iplantc.de.client.validator.IPlantValidator; |
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