Lennart Landsmeer llandsmeer

## heat_equation_delta_sources.py
# Dirichlet bc eliminated
import numpy as np
import matplotlib.pyplot as plt
import scipy.sparse as sp
import scipy.sparse.linalg as spla

N = 64
sources = [
    (0.3, 0.3, 15),
    (0.7, 0.7, 25)

## master_recipe.py
import arbor

class master_recipe(arbor.recipe):
    def __init__(self, *recipes):
        arbor.recipe.__init__(self)
        self.recipes = list(recipes)
        self.setup_master_recipe()
        ### :::THIS IS THE ONLY PROBLEM:::
        ### global_properties() can not be specified up to subrecipe level
        ### which means catalogue mechanism names can not collide

## io_iv_curve.py
import json
import random
import time
import numpy as np
import matplotlib.pyplot as plt
from matplotlib import cm
import numba

@numba.jit(fastmath=True, cache=True, nopython=True)
def simulate(transient=10, seconds=1, delta=0.015, record_every=10):

## wled_js.html
<!doctype html>
<meta charset="utf-8">

<div id=live style='overflow-wrap: break-word; font-family: monospace'></div>

<script>
class Controller {
    constructor(ip) {
        this.ip = ip
        this.connect()

## hh.py
# Adapted from https://hodgkin-huxley-tutorial.readthedocs.io/en/latest/_static/Hodgkin%20Huxley.html

%matplotlib inline

import numpy as np
import matplotlib.pyplot as plt
from scipy.integrate import solve_ivp

C_m  =   1.0
g_Na = 120.0

## iocell.py
import matplotlib.pyplot as plt
import numba
import numpy as np

@numba.jit(fastmath=True, cache=True, nopython=True)
def simulate(skip_initial_transient_seconds=0, sim_seconds=10, delta=0.005, record_every=20,
    # Parameters
    g_int           =   0.13,    # Cell internal conductance  -- now a parameter (0.13)
    p1              =   0.25,    # Cell surface ratio soma/dendrite
    p2              =   0.15,    # Cell surface ratio axon(hillock)/soma

## pyqt5_numpy.py
import sys
import numpy as np
from PyQt5 import QtGui, QtWidgets, QtCore

class MainWindow(QtWidgets.QMainWindow):
    def __init__(self):
        super().__init__()
        self.imshow = Grayscale()
        self.setCentralWidget(self.imshow)
        self.update_timer = QtCore.QTimer()

## tmux_get_all_windows_as_html.py
import sys
import pyte
import struct
import select
import time
import fcntl
import os
import pty
import subprocess
import termios

## ledfxmidi.py
import os
import time
import json
import requests
import rtmidi

# pip install python-rtmidi
midi = rtmidi.MidiIn()

ports = midi.get_ports()

## arbor_nmodl_to_sympy_v1.py
import sympy as sm
import lark

parser = lark.Lark(r'''
%import common.SIGNED_NUMBER    -> NUMBER
%import common.WS
%ignore WS
%ignore /\?.*\n/
%ignore /:.*\n/
	# Dirichlet bc eliminated
	import numpy as np
	import matplotlib.pyplot as plt
	import scipy.sparse as sp
	import scipy.sparse.linalg as spla

	N = 64
	sources = [
	(0.3, 0.3, 15),
	(0.7, 0.7, 25)
	import arbor

	class master_recipe(arbor.recipe):
	def __init__(self, *recipes):
	arbor.recipe.__init__(self)
	self.recipes = list(recipes)
	self.setup_master_recipe()
	### :::THIS IS THE ONLY PROBLEM:::
	### global_properties() can not be specified up to subrecipe level
	### which means catalogue mechanism names can not collide
	import json
	import random
	import time
	import numpy as np
	import matplotlib.pyplot as plt
	from matplotlib import cm
	import numba

	@numba.jit(fastmath=True, cache=True, nopython=True)
	def simulate(transient=10, seconds=1, delta=0.015, record_every=10):
	<!doctype html>
	<meta charset="utf-8">

	<div id=live style='overflow-wrap: break-word; font-family: monospace'></div>

	<script>
	class Controller {
	constructor(ip) {
	this.ip = ip
	this.connect()
	# Adapted from https://hodgkin-huxley-tutorial.readthedocs.io/en/latest/_static/Hodgkin%20Huxley.html

	%matplotlib inline

	import numpy as np
	import matplotlib.pyplot as plt
	from scipy.integrate import solve_ivp

	C_m = 1.0
	g_Na = 120.0
	import sys
	import numpy as np
	from PyQt5 import QtGui, QtWidgets, QtCore

	class MainWindow(QtWidgets.QMainWindow):
	def __init__(self):
	super().__init__()
	self.imshow = Grayscale()
	self.setCentralWidget(self.imshow)
	self.update_timer = QtCore.QTimer()
	import sys
	import pyte
	import struct
	import select
	import time
	import fcntl
	import os
	import pty
	import subprocess
	import termios
	import sympy as sm
	import lark

	parser = lark.Lark(r'''
	%import common.SIGNED_NUMBER -> NUMBER
	%import common.WS
	%ignore WS
	%ignore /\?.*\n/
	%ignore /:.*\n/