I hereby claim:
- I am lmtani on github.
- I am taniguti (https://keybase.io/taniguti) on keybase.
- I have a public key ASCll6gURTY8PtotQhknqBVuFMwZPzt3MJJztYC3rseT4wo
To claim this, I am signing this object:
I hereby claim:
To claim this, I am signing this object:
import requests | |
import os | |
import hashlib | |
# url = "http://sandbox.thesubdb.com" | |
url = "http://api.thesubdb.com" | |
user_agent = "SubDB/1.0 (Pyrrot/0.1; http://github.com/jrhames/pyrrot-cli)" | |
def hash_thesubdb(video_path): |
FROM continuumio/miniconda:4.6.14 | |
ENV DEBIAN_FRONTEND=noninteractive | |
RUN apt-get update && apt-get install -y build-essential postgresql postgresql-contrib | |
RUN conda config --add channels bioconda/label/cf201901 \ | |
&& conda config --add channels conda-forge/label/cf201901 \ | |
&& conda install augustus rmblast maker hisat2 braker busco=3.0.2 blast pfam_scan \ | |
&& pip install biopython bcbio-gff networkx markdown2 matplotlib \ |
g.vcf files and produced databases available in Google Drive: https://drive.google.com/file/d/1rq5p5YpDYY6n0OqTL05IaDAl8vlMhxNv/view?usp=sharing
from typing import Dict | |
import factory | |
import flask | |
import flask_sqlalchemy | |
import pydantic | |
import pytest | |
# Conforme: https://flask-sqlalchemy.palletsprojects.com/en/2.x/api/?highlight=init_app#flask_sqlalchemy.SQLAlchemy.init_app | |
db = flask_sqlalchemy.SQLAlchemy() |
""" | |
Script para gerar todas as CDSs de determinada assembly do genoma humano. | |
Essas coordenadas são usadas para o calculo de cobertura das regiões alvo | |
do exoma. | |
""" | |
from pyensembl import EnsemblRelease | |
CHROMOSOMES = list(map(str, list(range(1, 24)))) + ["X", "Y", "MT"] |
version development | |
workflow MinibuscoWorkflow { | |
input { | |
Array[String] accessions | |
String busco_lineage | |
} | |
call MinibuscoDownload { |