lpand

<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE plist PUBLIC "-//Apple Computer//DTD PLIST 1.0//EN" "http://www.apple.com/DTDs/PropertyList-1.0.dtd">
<!-- Generated by: TmTheme-Editor                 -->
<!-- ============================================ -->
<!-- app:  http://tmtheme-editor.herokuapp.com    -->
<!-- code: https://github.com/aziz/tmTheme-Editor -->
<plist version="1.0">
<dict>
	<key>author</key>
	<string>lpand</string>

lpand

package com.mediture.truchart.rest.resources;

import java.util.*;

import javax.ws.rs.GET;
import javax.ws.rs.Path;
import javax.ws.rs.Produces;
import javax.ws.rs.core.Context;
import javax.ws.rs.core.MediaType;
import javax.ws.rs.core.Response;

lpand

(add-to-list 'load-path "~/.emacs.d/auto-complete/")
(add-to-list 'load-path "~/.emacs.d/elisp/")
(load-library "mac-keyboard")
(load-library "auto-complete")
(add-to-list 'load-path "~/.emacs.d/elpa/yasnippet-0.8.0")
(add-to-list 'load-path "~/.emacs.d/multiple-cursors/")
(add-to-list 'custom-theme-load-path "~/.emacs.d/themes")

lpand

graph [
  node [
    id 0
    label "0"
    pathway [u'Hemostasis']
    domain [u'pfam05109']
    compartment [u'GO:0001931', u' GO:0005604', u' GO:0005615', u' GO:0005886', u' GO:0005887']
    name "SPN"
    disease [u'MYL003', u'MNT214', u'WSK001', u'MRG003', u'MYL040', u'BCL009']
  ]

lpand

#include <stdio.h>
#include <string.h>
#include <stdlib.h>
#include <math.h>
#include <unistd.h>
#include <time.h>

#define MAX 2000
#define UNDEF "NA"

lpand

var data = {"graphs":{"Gene Ontology (GO)":{"edges":[{"source":"ACE","target":"GO:0048856"},{"source":"AIMP1","target":"GO:0048856"},{"source":"AMHR2","target":"GO:0048856"},{"source":"ANKRD1","target":"GO:0048856"},{"source":"APRT","target":"GO:0048856"},{"source":"ARHGAP26","target":"GO:0048856"},{"source":"ATP7A","target":"GO:0048856"},{"source":"BLNK","target":"GO:0048856"},{"source":"BMP4","target":"GO:0048856"},{"source":"BRAF","target":"GO:0048856"},{"source":"BSG","target":"GO:0048856"},{"source":"CASC5","target":"GO:0048856"},{"source":"CD8A","target":"GO:0048856"},{"source":"CDKL5","target":"GO:0048856"},{"source":"CDKN1B","target":"GO:0048856"},{"source":"CDSN","target":"GO:0048856"},{"source":"CHRND","target":"GO:0048856"},{"source":"COL11A2","target":"GO:0048856"},{"source":"COX7B","target":"GO:0048856"},{"source":"CRYAB","target":"GO:0048856"},{"source":"DNAAF1","target":"GO:0048856"},{"source":"DSP","target":"GO:0048856"},{"source":"FHL1","target":"GO:0048856"},{"source":"FOXN1","target":"GO:0

lpand

var graph = (function (d3) {

  "use strict";

  return function graph (nodes, edges, options) {
    options = options || {};
    var container = d3.select(options.container);
    var nthTerms = options.showNth || 5;
    var margin = options.margin || { top: 20, right: 30, bottom: 20, left: 30 };
    var width = (options.width || 1200) - margin.right - margin.left;

lpand

function forward (receiver, methods, toProvider) {
  methods.forEach(function (methodName) {
    receiver[methodName] = function () {
      var result = toProvider[methodName].apply(toProvider, arguments);
      // for method chaining
      return result === toProvider ? this : result;
    };
  });

  return receiver;

lpand

;(function (angular) {
"use strict";

var app = angular.module("martVisualEnrichment.directives");


/**
 *
 * This implementation is highly inspired by https://github.com/angular-ui/bootstrap/blob/master/src/tabs/tabs.js
 *

lpand

"use strict";

angular.module("martVisualEnrichment.services", [])
.factory("results",
        ["$document", "$q", "enrichmentResultsId",
        function resultsFactory ($doc, $q, containerId) {

    // I'm using a promise such that if we get data with ajax the API won't
    // change.
    var deffed = $q.defer(),