lstagner

lstagner

lstagner

lstagner

EXECUTING dens[err_ind-1] = sum(max(sol.x,0))
dens_err[err_ind-1] = norm(sol.sigma)
x[:,:,err_ind-1] = reshape(max(sol.x,0),npitch,nenergy)
sigma[:,:,err_ind-1] = reshape(sol.sigma,npitch,nenergy)
dx[:,:,err_ind-1] = x[:,:,err_ind-1] .- dist
pygui(true)
make_plots(energy,pitch,x[:,:,err_ind-1],sigma[:,:,err_ind-1],dist)
SENDING IPython Msg [ idents pyin ] {
  header = ["msg_id"=>"1442b99d-500f-488e-99c2-e2b4ad9f2a51","msg_type"=>"pyin","username"=>"username","session"=>"9435E47D56D3486F894CA922AEFD2A89"],
  metadata = Dict{String,Any}(),

lstagner

EXECUTING using PyPlot
SENDING IPython Msg [ idents pyin ] {
  header = Dict("msg_id"=>"fa39874c-5f4a-4265-add0-28cdfb910334","msg_type"=>"pyin","username"=>"username","session"=>"5DBF73B2FA44486D88C609D2E1C4BCE8"),
  metadata = Dict{AbstractString,Any}(),
  content = Dict{ASCIIString,Any}("code"=>"using PyPlot","execution_count"=>1)
}
Warning: New definition 
    call(Type{PyCall.PyDict}, Base.Associative{#K<:Any, Any}) at /home/lstagner/.julia/v0.4/PyCall/src/conversions.jl:464
is ambiguous with: 
    call(Type{PyCall.PyDict}, Base.Associative{Any, #V<:Any}) at /home/lstagner/.julia/v0.4/PyCall/src/conversions.jl:463.

lstagner

SENDING IPython Msg [ idents pyerr ] {
  header = Dict("msg_id"=>"d3543821-d811-4529-b786-ce4128bb9015","msg_type"=>"pyerr","username"=>"username","session"=>"937AFEA751D3466C8BF47EA8C7C66E2A"),
  metadata = Dict{AbstractString,Any}(),
  content = Dict{ASCIIString,Any}("traceback"=>UTF8String["PyError (:PyObject_Call) <type 'exceptions.AttributeError'>\nAttributeError(\"'Path' object has no attribute '_vertices'\",)\n  File \"/home/lstagner/anaconda3/envs/python2/lib/python2.7/site-packages/matplotlib/backend_bases.py\", line 2158, in print_figure\n    **kwargs)\n  File \"/home/lstagner/anaconda3/envs/python2/lib/python2.7/site-packages/matplotlib/backends/backend_agg.py\", line 521, in print_png\n    FigureCanvasAgg.draw(self)\n  File \"/home/lstagner/anaconda3/envs/python2/lib/python2.7/site-packages/matplotlib/backends/backend_agg.py\", line 469, in draw\n    self.figure.draw(self.renderer)\n  File \"/home/lstagner/anaconda3/envs/python2/lib/python2.7/site-packages/matplotlib/artist.py\", line 59, in draw_

lstagner

#=
The MIT License (MIT)
Copyright (c) 2015 Luke Stagner
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE S

lstagner

LoadError: PyError (:PyObject_Call) <class 'AttributeError'>
AttributeError("'PathCollection' object has no attribute 'do_3d_projection'",)
  File "/home/lstagner/anaconda3/lib/python3.5/site-packages/mpl_toolkits/mplot3d/axes3d.py", line 2273, in scatter
    patches = Axes.scatter(self, xs, ys, s=s, c=c, *args, **kwargs)
  File "/home/lstagner/anaconda3/lib/python3.5/site-packages/matplotlib/__init__.py", line 1812, in inner
    return func(ax, *args, **kwargs)
  File "/home/lstagner/anaconda3/lib/python3.5/site-packages/matplotlib/axes/_axes.py", line 3922, in scatter
    self.add_collection(collection)
  File "/home/lstagner/anaconda3/lib/python3.5/site-packages/matplotlib/axes/_base.py", line 1676, in add_collection
    collection.set_clip_path(self.patch)

lstagner

#The MIT License (MIT)

#Copyright (c) 2016 Luke Stagner

#Permission is hereby granted, free of charge, to any person obtaining a copy of this software
#and associated documentation files (the "Software"), to deal in the Software without restriction,
#including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense,
#and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so,
#subject to the following conditions:

lstagner

@everywhere push!(LOAD_PATH, "/home/stagnerl/")
import InterpolatingFunctions; @everywhere using InterpolatingFunctions
import GuidingCenterOrbits; @everywhere using GuidingCenterOrbits
import HDF5; @everywhere using HDF5
import Clustering; @everywhere using Clustering
import Iterators; @everywhere using Iterators
import StaticArrays; @everywhere using StaticArrays
import FastKmeans; @everywhere using FastKmeans

function make_clustered_distribution_file(M,wall,nkk)