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CentOS7 Virtual Box instance on Sierra

These instructions allow you to create a VirtualBox VM on a MacOS Sierra instance.

Table of contents

• Default settings
• Getting a CentOS 7 image
• Setting up CentOS 7
• Networking CentOS 7
• Installing the guest additions

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R Ecology Lesson

Contents

• Getting started
• Introducing R and programming basics
• Introduction to R
• Managing data in R
• Data frames
• dplyr
• ggplot2

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Git instructor script

Starting out

My instructor script for steps 1-9 of the software carpentry git lesson.

Motivational Scenarios [ 5 minutes ]

Can motivate the use of a revision control system:

• Development encompassing multiple systems.

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Introduction to the shell - Part I

First part of my instructor script for steps 1-4 of the software carpentry shell lesson.

Introduction [5 mins]

Learning objectives

Computers used to:

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Introduction to the Shell - part II

Second part of my instructor script for steps 4-7 of the software carpentry shell lesson.

Loops [15 mins]

Objectives

• Write a loop that applies one or more commands separately to each file in a set of files.
• Trace the values taken on by a loop variable during execution of the loop.
• Explain the difference between a variable’s name and its value.

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Introducing git

My instructor script for steps 1-9 of the software carpentry git lesson with some additions.

Contents

• Pre-checks
• Motivational Scenarios
• Check that we have git in the shell
• Getting help

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SQL lesson

Software carpentry instructor notes for this SQL lesson. Have separated the challenges into a separate gist. Note I have found the time times do not work as stated.

Contents

• 1. Prerequisites
• 2. Selecting data
• 3. Sorting and Removing Duplicates
• 4. Filtering
• 5. Calculating New Values

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SQL Questions

Contents

• Challenge 1.1
• Challenge 2.1
• Challenge 3.1
• Challenge 4.1
• Challenge 5.1
• Challenge 6.1
• Challenge 7.1

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Spreadsheets

This is a reduced version of the Carpentries ecology spreadsheet lesson. There are also Carpentry instructor notes.

Contents

• Overview
• Setup
• Introduction