| #!/bin/bash | |
| # Fix curl/gnutls SSLv3 on Ubuntu 14.04 | |
| # | |
| # The curl version on Ubuntu 14.04 Trusty Tahr has a bug (through gnutls) in | |
| # its SSLv3 support. This also affects git. | |
| # | |
| # http://sourceforge.net/p/curl/bugs/1319/ | |
| # | |
| # This downgrades curl to 7.32 (from Ubuntu 13.12), which does not have the | |
| # bug. It also uninstalls the landscape-client and python-pycurl packages |
| <!doctype html> | |
| <style> | |
| #original input[type=range] { | |
| -webkit-appearance: none !important; | |
| } | |
| #original input[type=range]::-webkit-slider-runnable-track { | |
| height: 2px; | |
| width: 100px; | |
| background: red; |
When the program is started, the user is presented with a minimal pedigree consisting of a father, a mother and a child. On the left of the screen there is a slider for zooming in and zooming out.
In the top left corner three buttons can be seen, two of them (undo and redo) are greyed out. The third button is for downloading the pedigree.
In the top right corner two buttons can be seen, the left one (drawing view) is
Default Vagrant configurations.
| Application | IP | SSH forward | HTTP forward | HTTPS forward |
|---|---|---|---|---|
| Mutalyzer | 192.168.111.222 | 2522 | 8088 | 8089 |
| Base server | 192.168.111.223 | 2523 | ||
| Varda | 192.168.111.224 | 2524 | 8090 | 8091 |
| ELK | 192.168.111.225 | 2525 | 8092 | 8093 |
| logstash-forwarder | 192.168.111.226 | 2526 | ||
| Jenkins | 192.168.111.227 | 2527 | 8094 |
| # Auto SSH session aliases for hosts configured in ~/.ssh/config. | |
| command_not_found_handle() { | |
| if [[ ! "$1" ]] ; then | |
| return 127 | |
| fi | |
| if ! grep -q "^Host $1\$" ~/.ssh/config; then | |
| return 127 | |
| fi | |
| ssh $* | |
| } |
Download a dbSNP database from the UCSC as a CSV file: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/
For example:
wget http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/snp137Common.txt.gz
Note that the chromStart column values are 0-based.
This formalisation is based on the idea that the meaning of a variant description is a set of fixed sequences projected on the referencesequence. (We call them replacements, but they can also be identities.) We explicitely do not mean the result (sequence) of applying these replacements. At least in my understanding, that is not how HGVS is intended to interpreted (and would also make it impossible to combine variants; how do you combine two plain sequences?).
I hereby claim:
To claim this, I am signing this object: