matthew-brett

#!/usr/bin/env python
""" Find defs, cpdefs in pyx files, print calls in tests """
from __future__ import division, print_function

DESCRIP = "Find def and cpdef functions / methods, look for calls in tests"
EPILOG = \
"""Search for all ".pyx" files at given file root.

Find all functions and method definitions in the pyx files by looking for
"def " or "cpdef " followed by an identifier and open parentheses.

matthew-brett

""" Test we can correctly import example PARREC files
"""
from __future__ import print_function, absolute_import

from glob import glob
from os.path import join as pjoin, basename, splitext, exists, dirname

import numpy as np

from nibabel import load as top_load, Nifti1Image

matthew-brett

""" mpmath hyp1f1 algorithm crudely ported """
import math
import cmath
import operator

import numpy as np

import scipy.special as sps

eps = np.finfo(float).eps

matthew-brett

""" Make html pages redirecting to another URL base

USAGE: rewrite_pages.py <path-to-html> <base-url-to-redirect-to>
"""

import os
from os.path import join as pjoin, relpath
import sys

matthew-brett

import numpy as np

import scipy.linalg as spl

blas_routines = [
    'dot',
    'nrm2',
    'asum',
    # 'idamax',
    'swap',

matthew-brett

from pprint import pprint

import scipy.linalg as spl


def get_routine(routine_name, type='blas'):
    routines = getattr(spl, '_f' + type, None)
    if routines is None:
        routines = getattr(spl, type, None)
    return getattr(routines, routine_name, 'missing')

matthew-brett

Notes on the 1.9.3 release

1.9.3 is a bugfix-only release to give us a numpy version that works on Python 3.5.

Python 3.5 is built with Microsoft Visual C++ 14.0 (MSVC++ 2015) see these two blog posts by the Python Windows maintainer, Steve Dower:

• http://stevedower.id.au/blog/building-for-python-3-5/
• http://stevedower.id.au/blog/building-for-python-3-5-part-two/

matthew-brett

#!/bin/bash
set -e
PYTHON_VERSIONS="2.6 2.7 3.3 3.4 3.5"
CYTHON_VERSIONS="0.17 0.17.1 0.17.2 0.17.3 0.17.4 0.18 \
    0.19 0.19.1 0.19.2 0.20 0.20.1  0.20.2 \
    0.21 0.21.1 0.21.2 0.22 0.22.1 \
    0.23 0.23.1 0.23.2 0.23.3 0.23.4"

export LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH

matthew-brett

#!/bin/bash
set -e
PYTHON_VERSIONS="2.6 2.7 3.3 3.4 3.5"
NUMPY_VERSIONS="1.6.1 1.6.2 1.7.1 1.7.2 1.8.0 1.9.3 1.10.4"
MANYLINUX_URL=https://nipy.bic.berkeley.edu/manylinux
CYTHON_VERSION=0.21.2

export LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH

function lex_ver {

matthew-brett

#!/bin/bash
set -e

MANYLINUX_URL=https://nipy.bic.berkeley.edu/manylinux
HDF5_VERSION_2=1.8.16

export LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH

# Get hdf5 libraries
# curl -LO $MANYLINUX_URL/hdf5-${HDF5_VERSION_1}.tgz