matthew-brett

from pprint import pprint

import scipy.linalg as spl


def get_routine(routine_name, type='blas'):
    routines = getattr(spl, '_f' + type, None)
    if routines is None:
        routines = getattr(spl, type, None)
    return getattr(routines, routine_name, 'missing')

matthew-brett

# Checkin from SVN - using a local copy I had to hand
cat > authors.txt << EOF 
mcc = Michael Castelle <mcc@uchicago.edu>
jdh2358 = John Hunter <jdh2358@gmail.com>
michael.castelle = Michael Castelle <mcc@uchicago.edu>
jarrod.millman = Jarrod Millman <jarrod.millman@gmail.com>
EOF
git svn clone --authors-file=authors.txt file:///home/mb312/backups/nipy-svn/ni/pbrain/trunk pbrain-svn
# commit list from git log --pretty="%h"
# 51eacd2

matthew-brett

#!/usr/bin/env python
''' Tiny script to do perl -p -i -e -type replace on text in files '''

import sys
import re


def perl_dash_pie(in_exp, out_str, filename):
    in_reg = re.compile(in_exp)
    in_txt = open(filename, 'rt').read(-1)

matthew-brett

Notes on the 1.9.3 release

1.9.3 is a bugfix-only release to give us a numpy version that works on Python 3.5.

Python 3.5 is built with Microsoft Visual C++ 14.0 (MSVC++ 2015) see these two blog posts by the Python Windows maintainer, Steve Dower:

• http://stevedower.id.au/blog/building-for-python-3-5/
• http://stevedower.id.au/blog/building-for-python-3-5-part-two/

matthew-brett

# An install file for ATLAS SSE2-only build on 64-bit Windows
#
# Must be unix line endings
# In vim - set ff=unix
# Turn off CPU throttling
# Control panel, Hardware and sound, Power options, Select a power plan, Show
# additional plans, High perfornamce
win_home="/cygdrive/c/Users/mb312"
downloads="${win_home}/Downloads"
code_home="/cygdrive/c/code"

matthew-brett

import os
from os.path import join as pjoin, isdir
import sys
import shutil
from subprocess import call

input_dir = '/Users/mb312/dev_trees'
output_dir = os.getcwd()
for dir in sorted(os.listdir(input_dir)):
    if dir.startswith('.'):

matthew-brett

#!/bin/bash
set -e
PYTHON_VERSIONS="2.6 2.7 3.3 3.4 3.5"
CYTHON_VERSIONS="0.17 0.17.1 0.17.2 0.17.3 0.17.4 0.18 \
    0.19 0.19.1 0.19.2 0.20 0.20.1  0.20.2 \
    0.21 0.21.1 0.21.2 0.22 0.22.1 \
    0.23 0.23.1 0.23.2 0.23.3 0.23.4"

export LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH

matthew-brett

#!/bin/bash
set -e
PYTHON_VERSIONS="2.6 2.7 3.3 3.4 3.5"
NUMPY_VERSIONS="1.6.1 1.6.2 1.7.1 1.7.2 1.8.0 1.9.3 1.10.4"
MANYLINUX_URL=https://nipy.bic.berkeley.edu/manylinux
CYTHON_VERSION=0.21.2

export LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH

function lex_ver {

matthew-brett

#!/bin/bash
set -e

MANYLINUX_URL=https://nipy.bic.berkeley.edu/manylinux
HDF5_VERSION_2=1.8.16

export LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH

# Get hdf5 libraries
# curl -LO $MANYLINUX_URL/hdf5-${HDF5_VERSION_1}.tgz

matthew-brett

#!/bin/bash
# Build libh5py library
set -e

SZIP_VERSION=2.1
SZIP_URL=http://www.hdfgroup.org/ftp/lib-external/szip/
HDF5_VERSIONS="1.8.3 1.8.18"
HDF5_URL=http://www.hdfgroup.org/ftp/HDF5/releases

export LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH