bedtools intersect -abam path/to/input.bam -b path/to/regions.bed > out.bam
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import numpy as np | |
import pandas as pd | |
import matplotlib.pyplot as plt | |
import time | |
data = [] | |
for n_elements in [100, 1000, 10000, 100000]: | |
a = range(n_elements) | |
sa = set(a) | |
b = np.array(a) + 50 |
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/*! | |
* Bootstrap v3.2.0 (http://getbootstrap.com) | |
* Copyright 2011-2014 Twitter, Inc. | |
* Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE) | |
*//*! normalize.css v3.0.1 | MIT License | git.io/normalize */html{font-family:sans-serif;-webkit-text-size-adjust:100%;-ms-text-size-adjust:100%}body{margin:0}article,aside,details,figcaption,figure,footer,header,hgroup,main,nav,section,summary{display:block}audio,canvas,progress,video{display:inline-block;vertical-align:baseline}audio:not([controls]){display:none;height:0}[hidden],template{display:none}a{background:0}a:active,a:hover{outline:0}abbr[title]{border-bottom:1px dotted}b,strong{font-weight:700}dfn{font-style:italic}h1{margin:.67em 0;font-size:2em}mark{color:#000;background:#ff0}small{font-size:80%}sub,sup{position:relative;font-size:75%;line-height:0;vertical-align:baseline}sup{top:-.5em}sub{bottom:-.25em}img{border:0}svg:not(:root){overflow:hidden}figure{margin:1em 40px}hr{height:0;-webkit-box-sizing:content-box;-moz-box-sizing:cont |
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hardstatus alwayslastline '%{= G}[ %{G}%H %{g}][%= %{= w}%?%-Lw%?%{= R}%n*%f %t%?%{= R}(%u)%?%{= w}%+Lw%?%= %{= g}][ %{y}Load: %l %{g}][%{B}%Y-%m-%d %{W}%c:%s %{g}]' | |
startup_message off | |
termcapinfo xterm* ti@:te@ | |
backtick 1 5 5 true | |
termcapinfo rxvt* 'hs:ts=\E]2;:fs=\007:ds=\E]2;\007' |
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#!/bin/sh | |
# | |
# purge-old-kernels - remove old kernel packages | |
# Copyright (C) 2012 Dustin Kirkland <kirkland@ubuntu.com> | |
# | |
# Authors: Dustin Kirkland <kirkland@ubuntu.com> | |
# Kees Cook <kees@ubuntu.com> | |
# | |
# This program is free software: you can redistribute it and/or modify | |
# it under the terms of the GNU General Public License as published by |
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def _save_more_extensions(filename, extensions=['png', 'svg', 'pdf']): | |
for ext in extensions: | |
comp_filename = "{0}.{1}".format(filename, ext) | |
plt.savefig(comp_filename, dpi=300) | |
print "Saved plot: {0}".format(comp_filename) |
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from pysam import VariantFile | |
import time | |
def count_oldvar_reg(vcffile_reg, labels=["OLDVARS", "OLDVARS_A", "OLDVARS_B"]): | |
t_start = time.time() | |
bcf_in = VariantFile(vcffile_reg) | |
total = 0 | |
reg = 0 | |
for rec in bcf_in: |
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# blackkiwi - production app | |
FROM mattions/webber:1.0 | |
MAINTAINER mattions "mattions@gmail.com" | |
ENV DEBIAN_FRONTEND noninteractive | |
ENV PYTHONUNBUFFERED 1 | |
RUN apt-get update && apt-get -qy install\ | |
python3 \ |
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# Upgrade your requirements | |
# - Finds outdated package with pip | |
# - install latest stable version | |
# - Update the requirements with the latest | |
pip list --outdated | cut -d' ' -f1 | xargs pip install --upgrade | |
pip freeze > requirements.txt |
What is a vision?
Your vision answers the question "What do I want?" A clear vision help you communicate why you're here and what impact you're going to have.
Your vision should be aligned with the company vision, with your manager's V2MOM, and it should be personal. It should be an honest reflection of your own vision for your own work.
If you manage a team, it should be reflective of the purpose of the team and your collective impact.