jelber2

# previous versions allowed to generate directly from BAM, but there seemed to have been some troubles 
# between versions of XAM, so this version is working so far for its intended purpose on https://github.com/brendanofallon/jovian
# also, this version is rather fast
#
#
# note: ignores quality scores at the moment - fixed in revision#4
# note2: outputs to STDOUT a SAM file without a header
# tested with julialang v1.10.2 and XAM v0.4.0
# $ julia shredBAM.jl input.bam 300 > test.sam.noheader
#

adamkucharski

# Example code for simulation recovery of infection dynamics from deaths for COVID -----------------------------------------

# Load libraries:

# install.packages("EpiNow2", repos = "https://epiforecasts.r-universe.dev")
library(EpiNow2)

# Simulate data and delays -----------------------------------------

# Simulate infections with a sharp drop

adamkucharski

# - - - - - - - - - - - - - - - - - - - - - - - 
# Code by Adam Kucharski to accompany post 'Counting current COVID infections' (2nd Jan 2024)
# Post is available at: https://kucharski.substack.com
# Code in this file is shared under an MIT license (https://opensource.org/license/mit/)
# - - - - - - - - - - - - - - - - - - - - - - - 

# Load libraries
library(dplyr)
library(readr)

avonmoll

library.yaml

jonocarroll

library(rextendr)

rust_function("
fn rowmin(m: RMatrix::<i32>) -> Vec<i32> {

    // convert to an ndarray
    let matrix = <ArrayView2<i32>>::from_robj(&m).unwrap();

    // store results
    let mut min_values = Vec::with_capacity(matrix.len());

beeb

#let segments = (
  (nomenclature: "4", title: "Refrigerant Type", description: [4 = R-410A \ 2 = R22], separator: ""),
  (nomenclature: "TE", title: "Application", description: [TE = Fully Convertible \ TG = Semi Convertible], separator: "-"),
  (nomenclature: "E", title: "Product Family", description: [E = Leadership -- Variable Speed \ P = Leadership], separator: "-"),
)

#let nomenclature(
  segments: ((nomenclature: "A", title: "Foo", description: [Bar], separator: "-"))
) = {
  place(top + left, [#box()#label("margins")]) // get top + left margins dynamically

te-lang-wakker

// todo: key this by the provided label or just use dependency injection
#let this-counter = counter("info-box")

#let info-box(
  title: none, 
  sections: none,
  label: none, 
  caption: none,
  radius: 3pt,
  inset: 16pt, 

BlueskyFR

// Glossary code by Hugo Cartigny (BlueskyFR) 🍉

#let glossary(indent-defs: false, doc) = {
  // ✨ The glossary displays its items using level 99 headings
  let glossary = state("wow", (:))
  
  // Hide the numbering for level 99 titles
  show heading.where(level: 99): it => text(weight: "regular", it.body)
  
  let page-refs-color = rgb("#7630EA")

dlakelan

using Pkg
Pkg.activate(".")
Pkg.add(["Turing","Distributions","ApproxFun","QuadGK","StatsPlots","LinearAlgebra","DataFrames"])

using Turing, Distributions, ApproxFun, QuadGK, StatsPlots, LinearAlgebra, DataFrames

# a prior over functions that go up then come down... First let's see how ApproxFun works

Random.set_global_seed!(123456)
f = Fun(Chebyshev(Interval(0..100)),randn(12))

strengejacke

// save to windows-user directory

linters: with_defaults(object_name_linter = NULL,
                       object_length_linter(50),
                       commented_code_linter = NULL,
                       object_usage_linter = NULL,
                       line_length_linter(120),
                       cyclocomp_linter = cyclocomp_linter(50))