mfansler

name: foo
channels:
  - conda-forge
  - bioconda
  - defaults
dependencies:
  - _libgcc_mutex=0.1=conda_forge
  - _openmp_mutex=4.5=1_gnu
  - _r-mutex=1.0.1=anacondar_1
  - binutils_impl_linux-64=2.35=h18a2f87_9

mfansler

name: so-ipopt
channels:
  - conda-forge
  - defaults
dependencies:
  - pyomo
  - ipopt

mfansler

package main

import (
       "fmt"

       "math"
       
       "gonum.org/v1/gonum/stat/distuv"
)

mfansler

#!/usr/bin/env conda run -n base --no-capture-output python                                                                                                  

## Usage: conda-list-any.py [PACKAGE ...]                                                                                                                    
## Example: conda-list-any.py numpy pandas                                                                                                                   

import conda.gateways.logging
from conda.core.envs_manager import list_all_known_prefixes
from conda.cli.main_list import list_packages
from conda.common.compat import text_type
import sys

mfansler

#!/bin/bash -le

# Usage: ./conda-archive.sh foo
# Result: creates "foo.full.yaml", "foo.min.yaml", and removes "foo" environment

echo "Archiving environment '$1' to YAML"

conda env export -vn $1 > $1.full.yaml
conda env export -vn $1 --from-history > $1.min.yaml

mfansler

#!/bin/bash -l                                                                                                                                  
# use tmp dir to avoid name conflicts
tmp=$(mktemp -d)

# solve environment, ignoring existing cache
CONDA_PKGS_DIRS=$tmp conda create -dp $tmp/0 --json "$@" |\
    # filter to tarball URLs
    grep '"url"' | grep -oE 'https[^"]+' |\
    # download locally
    xargs wget -c

mfansler

#!/bin/sh
sudo launchctl kickstart -k system/com.apple.audio.coreaudiod

mfansler

#################################################################################
# INSTALL MAMBA ON GOOGLE COLAB
#################################################################################
! wget -O miniconda.sh https://repo.anaconda.com/miniconda/Miniconda3-py37_4.10.3-Linux-x86_64.sh
! chmod +x miniconda.sh
! bash ./miniconda.sh -b -f -p /usr/local
! rm miniconda.sh
! conda config --add channels conda-forge
! conda install -y mamba
! mamba update -qy --all

mfansler

#!/bin/bash
## space-separated input
## -n1: run each separately
## -P6: run up to 6 in parallel
## -I '{}': replace {} with argument
## \$ delays evaluation to bash execution
## waits randomly for up to five seconds, then prints
echo {1..12} |\
  xargs -n1 -P6 -I '{}' \
  bash -c "sleep \$[ \$RANDOM % 5 ]; echo {}"

mfansler

library(rhdf5)
library(tidyverse)

read_ad_df <- function (file, name) {
    x_attrs <- h5readAttributes(file, name)
    
    ## check requested entry is a dataframe
    ## TODO: do we need to check encoding-version?
    stopifnot(x_attrs[['encoding-type']] == "dataframe")