mhl

#!/usr/bin/python3.1

from subprocess import call, Popen, PIPE, check_call
import re
import sys
import os
import errno

# !! n.b. You probably shouldn't be using this - it's vastly faster and safer to use
# one of the other methods mentioned here:

mhl

#!/usr/bin/python3.1

# This is script that extracts the trees of two commits to temporary
# directories and then runs meld on both directories, so you can compare
# them using meld's nice recursive browsing interface.
#
# This is for an answer to this question:
#     http://stackoverflow.com/questions/2006032/view-differences-of-branches-with-meld

from subprocess import call, Popen, PIPE, check_call

mhl

(import '(ij.io DirectoryChooser))
(import '(java.io File))
(import '(java.io FileWriter))
(import '(ij.plugin FolderOpener))
(import '(ij IJ))
(import '(ij.io FileSaver))

;; d should be a java.io.File object

(defn files-in-directory [d]

mhl

#!/usr/bin/python2.6

# This script "unsubmodulizes" a git repository - i.e. it takes a git
# repository with submodules and replaces the submodules with the
# history of the submodule merged into a subdirectory of the same
# name.  I knocked this up quickly as an answer to this stackoverflow
# question:
#
#   http://stackoverflow.com/questions/4542729/undo-submodulization-in-git
#

mhl

Checking prerequisites of (fiji.build.SubFake) jars/weka.jar <- fiji jars/Fiji.jar ...
Building (fiji.build.SubFake) jars/weka.jar <- fiji jars/Fiji.jar ...
Building in modules/weka/
Checking prerequisites of (fiji.build.ExecuteProgram) weka.jar <- weka/dist/weka.jar
Checking prerequisites of (fiji.build.ExecuteProgram) weka/dist/weka.jar <- 
Building (fiji.build.ExecuteProgram) weka/dist/weka.jar <- 
Executing: '../../fiji' '--ant' '-f' 'weka/build.xml' 'exejar'
Found that JAVA_HOME was: '/usr/lib/jvm/java-6-openjdk/'
Buildfile: weka/build.xml

mhl

import re
import os

from java.awt import Color
from ij3d import Image3DUniverse

univ = Image3DUniverse(512, 512)
univ.show()

# d = '/home/mark/painting-demo/static/data'

mhl

#!/bin/bash

# A script that squashes your entire current branch down to a single commit,
# if this repository has a single root commit.  This will change the object
# name of the root commit.  This is for an answer to the Stack Overflow
# question: http://stackoverflow.com/questions/5266340/

if [ -n "$(git status --porcelain)" ]
then
    echo "git status wasn't clean - refusing to run..."

mhl

import os
import re
from tracing import PathAndFillManager

# An example script showing how to convert all the .traces
# files in a directory to SWC files.  (The .traces format
# is the native file format of Simple Neurite Tracer.)

def run():
    d = IJ.getDirectory("Choose your directory of .traces files...")

mhl

#!/bin/sh

set -e

CURRENT_BRANCH="$(git symbolic-ref HEAD)"
CURRENT_BRANCH_UPSTREAM="$(git rev-parse --symbolic-full-name @{u} 2> /dev/null)"

# Update the remote-tracking branches for every remote for which
# remote.<name>.skipDefaultUpdate is not true:
git remote update default

mhl

#!/usr/bin/ruby -w

require 'statistics2'

class Numeric
  def to_percent
    "#{(self * 100).round}%"
  end
end