Skip to content

Instantly share code, notes, and snippets.

@michaelaye
Created April 10, 2021 03:47
Show Gist options
  • Save michaelaye/8441cb74ba59a79285f17af574d74b8d to your computer and use it in GitHub Desktop.
Save michaelaye/8441cb74ba59a79285f17af574d74b8d to your computer and use it in GitHub Desktop.
Display the source blob
Display the rendered blob
Raw
{
"cells": [
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"import numpy as np\n",
"import xarray as xr\n",
"import hvplot.xarray\n",
"from holoviews import opts"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"arr = np.arange(2000000).reshape(2000, 1000)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"da = xr.DataArray(\n",
" data=arr,\n",
" dims=['x','y'],\n",
" coords = {\n",
" 'x':np.arange(2000),\n",
" 'y':np.arange(1000,0, -1)\n",
" }\n",
")\n",
"da"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"#### Create anomaly in a corner, note the descending y-axis, but using positional indexing:"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"da[100:200, 100:200] = 100"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Anomaly placed at coordinates (100:200, 800:900)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"da.hvplot(x='x', y='y', colorbar=False, data_aspect=1)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Using datashade = True, anomaly shows at (100:200, 100:200)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"da.hvplot(datashade=True, x='x', y='y', data_aspect=1)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"### Presume: Descending coordinates are the problem"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"da2 = np.flip(da, 1)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"da2"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"> Note the now ascending y coordinate !!\n",
"\n",
"### Plotting without datashade shows the correct and same thing, despite the flip\n",
"... because the default plotter uses always ascending coordinates"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"da2.hvplot(x='x', y='y', colorbar=False, data_aspect=1)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### and suddenly, using datashade is fine:"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"da2.hvplot(x='x', y='y', datashade=True, data_aspect=1)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Does x-axis have same problem?"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"da3 = xr.DataArray(\n",
" data=arr,\n",
" dims=['x','y'],\n",
" coords = {\n",
" 'x':np.arange(2000, 0, -1),\n",
" 'y':np.arange(1000)\n",
" }\n",
")\n",
"da3"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"da3[100:200, 100:200] = 100"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"da3.hvplot(x='x', y='y', colorbar=False, data_aspect=1)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"### Yep, same problem here:"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"da.hvplot(x='x', y='y', datashade=True, data_aspect=1)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": []
}
],
"metadata": {
"kernelspec": {
"display_name": "Python [conda env:py38] *",
"language": "python",
"name": "conda-env-py38-py"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.8.6"
},
"widgets": {
"application/vnd.jupyter.widget-state+json": {
"state": {},
"version_major": 2,
"version_minor": 0
}
}
},
"nbformat": 4,
"nbformat_minor": 4
}
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment