mikbuch

import os
import re
import subprocess as sp
import argparse

'''
Script to automatize mapping neuroimaging data from volumes (NIfTI) to brain
surface (workbench). This script is dedicated for multiple files. The simplified
version of this script, for single NIfTI file is available here:
https://gist.github.com/mikbuch/fb28aef0f77c7c7aeeff92a61b109d16

mikbuch

// Imports required
import java.sql.ResultSet;
import java.sql.ResultSetMetaData;
import java.sql.SQLException;

/**
 * Print a result set to system out.
 *
 * @param rs The ResultSet to print
 * @throws SQLException If there is a problem reading the ResultSet

mikbuch

source ~/antigen.zsh

# Load the oh-my-zsh's library.
antigen use oh-my-zsh

# Bundles from the default repo (robbyrussell's oh-my-zsh).
antigen bundle git
antigen bundle heroku
antigen bundle pip
antigen bundle lein

mikbuch

import serial

# Source: https://pyserial.readthedocs.io/en/latest/shortintro.html#opening-serial-ports
# Additional info:
# * you have to install pyserial in order for this code to work, command `sudo pip install serial`
# * run this script with sudo: `sudo python read_serial.py`

with serial.Serial('/dev/ttyUSB0', 9600, timeout=1) as ser:
    while True:
        # read a '\n' terminated line

mikbuch

int button1 = 11;
int button2 = 12;
int led1 = 7;
int led2 = 6;

void setup() {
  Serial.begin(9600);
  pinMode(button1, INPUT);
  pinMode(led1, OUTPUT);
  pinMode(button2, INPUT);

mikbuch

#!/bin/bash

# Takes all files within current directory and replaces one substring with
# another. This functionality is missing from standard linux shell (maybe
# it is possible to achieve with some complex awk command with regex, but
# I'd prefer to have a plain command for this).
#
#
# e.g. files:
#

mikbuch

message("\n")
message("############################################")
message("#        Mediation analysis example        #")
message("############################################")
message("\n")

message(" + Import packages\n")
library('mediation')
# For Sobel filter:
library('multilevel')

mikbuch

# Standard system upgrade:
sudo apt-get update
sudo apt-get upgrade -y

# Nodejs installation on debian (source (here)[https://tecadmin.net/install-laatest-nodejs-npm-on-debian/]):
sudo apt-get install curl software-properties-common
curl -sL https://deb.nodesource.com/setup_10.x | sudo bash -
sudo apt-get install -y nodejs nodejs-legacy

# Installing the Jupyter itself:

mikbuch

import argparse
import re
import subprocess as sp

'''
Script to automatize mapping neuroimaging data from volumes (NIfTI) to brain
surface (workbench).

Edit data: 2021-04-28
Author: Mikolaj Buchwald, mikolaj.buchwald@gmail.com

mikbuch

// This script is avilable as gist:
// https://gist.github.com/mikbuch/212cfb7365703caf517aa83642d10d91

/* Requirements:
 *  * "esp8266" board installed.
 * 
 * In order to install the board, go to:
 *   -- Tools => Board => Boards Manager => Install "esp8266"
 * It also includes "Wemos" boards ("LOLIN").
 *