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{
  "@context": "http://json-ld.org/contexts/person.jsonld",
  "@id": "http://dbpedia.org/resource/John_Lennon",
  "name": "John Lennon",
  "born": "1940-10-09",
  "spouse": "http://dbpedia.org/resource/Cynthia_Lennon"
}

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python -m markdown README.md > readme.html

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<?xml version="1.0" encoding="UTF-8"?>
<projectDescription>
        <name>SADI-Galaxy</name>
        <comment></comment>
        <projects>
        </projects>
        <buildSpec>
                <buildCommand>
                        <name>org.eclipse.jdt.core.javabuilder</name>
                <arguments>

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database_connection = postgres://galaxy:nire_pasahitza@localhost/galaxy_db
postgres:///<galaxy_prod><?user=galaxy&password=pasahitza>

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. ./galaxy_env/bin/activate
cd galaxy
./run.sh --stop-daemon && ./run.sh --daemon

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# https://bitbucket.org/cmungall/galaxy-obo/src/e29c68304c23628cb474bf4ac5f778c31a456850/tools/shared/errwrap.sh?at=default

#!/bin/bash

# Temporary storage for STDERR
TMP_STDERR="/tmp/errwrap-$$.tmp" || exit 1

# Run the program, send STDERR to temporary file
"$@" 2> $TMP_STDERR

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Install and configure Virtuoso in Ubuntu:

• sudo apt-get install virtuoso-opensource
• Edit /etc/virtuoso-opensource-6.1 and add DirsAllowed = ., /usr/share/virtuoso-opensource-6.1/vad, /home/megana/biom-ld/data. Tune memory etc.
• sudo service virtuoso-opensource-6.1 restart

Connect to Virtuoso and upload the RDF:

• isql-vt -U dba
• ld_dir('/home/megana/biom-ld/data','*.target.rdf','http://genomic-resources.eu/biom/bench/');

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#!/bin/sh
# url
# target file

wget --continue $1 -O $2

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rake new_page

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/galaxy-dist/tools/SADI/*.xml
!/galaxy-dist/tools/SADI/mergeRDFgraphs.xml
!/galaxy-dist/tools/SADI/sadi_generic.xml
!/galaxy-dist/tools/SADI/RDFSyntaxConverter.xml