moselhy

#!/usr/bin/env python
# -*- coding: UTF8 -*-
"""
author: Guillaume Bouvier
email: guillaume.bouvier@ens-cachan.org
creation date: 2014 04 29
license: GNU GPL
Please feel free to use and modify this, but keep the above information.
Thanks!
"""

moselhy

#!/usr/bin/env python

import sys
import os

if len(sys.argv) != 4:
    print("Usage: {} (string)filename.fastq (string)readID (int)numreads".format(sys.argv[0]))
    sys.exit(1)

filepath = sys.argv[1]

moselhy

#!/usr/bin/python

## BY: MOHAMED HESHAM MOSELHY
## OUTPUT A LIST OF TRAJECTORY FILES THAT START AT starttime AND ENDS WITH endtime
## Assumes that all the trajectory files correspond to checkpoint files with the same prefix
## For example: 1.trr or 2.###trr (where ### is anything or nothing) correspond to 1.cpt and 2.cpt, respectively
## Usage: filterTrj.py starttime endtime [outputfile - optional]
## Time units for start and end times are in picoseconds
## outputfile will be overridden if it exists

moselhy

# Author: Mohamed Moselhy
# April 14 2019

import requests
from bs4 import BeautifulSoup
import urllib3
from progress.bar import Bar

urllib3.disable_warnings(urllib3.exceptions.InsecureRequestWarning)

moselhy

#!/bin/bash

brew install python@3.10 azure-functions-core-tools@4 jq
# Core tool installation path if installed with Homebrew
directory="/opt/homebrew/Cellar/azure-functions-core-tools@4"

# Use 'find' to locate directories starting with '4.' and sort by modification time
latest_directory=$(find "$directory" -type d -name "4.*" | sort -n | tail -1)
python_worker_dir=$latest_directory/workers/python